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Full-length cDNAs
RAFL09-33-O22

RAFL09-33-O22

RIKEN Arabidopsis Full-length cDNAs

AACGAACAAA CCCTAGACCG TTAAAACCCT TATCAATTTC GCTGAAACGG 
CAAATGGAAG AAGTGTCGTC GGAGATGGAA GTGGAGGTTC AAAATCGTCA 
GCTTTCGGAT TCTTCTCCGG CTCAAAACGT GAAGAAATTT GGGCTCAAGA 
ACTCTATTCA GACCAACTTC GGCTCTGACT ACGTCTTCCA GATTGTCCCA 
AAAATCGATT GGACAGCAAT CGCGGTTTCC TTATCAACCA ACACCGTCAA 
GCTTTACTCG CCGGTGACTG GTCAGTACTA CGGCGAATGT AAAGGCCACT 
CCGATACCGT CAATCAGATT GCGTTTTCCT CCGACTCGGC GGCGTCTCCT 
CACGTTTTGC ACTCTTGTTC CTCCGATGGT ACCATTAGAT CTTGGGACAC 
TCGAAGTTTC CAACAGGTTT CGCGTATTGA TACTGGGAAT GATCAGGAGA 
TTTTCAGCTT CTCCTATGGA GGTGCTGCAG ATAATCTTCT GGCTGGTGGA 
TGCAAAGAGC AGGTTCTTTT GTGGGACTGG AGAAACTCAA AGCAAGTTGC 
TTGTTTAGAG GAATCCCACA TGGACGACGT CACTCAGGTA CACTTTGTTC 
CTAACAAGCC CAACAAGCTT CTTTCCGCTT CCGTGGATGG ATTGATATGT 
CTTTTTAACA CTGAAGGTGA TATCAATGAC GATGATCATC TGGAATCTGT 
CATCAACGTG GGAACTTCAA TTGGCAAAAT AGGTTTCCTC GGAGATGGCT 
ATAAAAAGCT CTGGTGTCTC ACTCATATAG AAACTCTAAG TATTTGGAAT 
TGGGAAGACG GAAGCTGTGA AGTCAACCTA GAGAAAGCTC GGGAACTCGC 
ATCAGATAGT TGGACTCAAG ATAATGTTGA TTATTTTGTT GATTGTCATT 
GTCCAGGAGG TGAAGATTTA TGGGTGATCG GTGGAACGTG CGCAGGAACC 
GTTGGTTATT TTCCGGTGAA CTACAAACAG CCTGGATCAA TCGGTACCGC 
TGAAGCTATT CTTGGTGGAG GTCACATAGA TGTAGTAAGG AGCGTTCTGC 
AGATGCCAGG CGAGTATGGA GGAGCTGCAG GGTTATTTGG ATGGACTGGG 
GGTGAAGATG GGCGACTATG TTGCTGGAAG TCGGATGAGG ATGCTACCGA 
GATTAACCGG TCTTGGACTT CAAGTGAGTT GGTTGTTAAG CCGCCAAGGA 
ACCGCAAGAA AAACAGACAC TCTCCTTACT AGTAAACAGA TACTACTTTT 
TGGGTCTTGT GTCTTTTATA AAAGTTGAGA CTGAAGAGGA CAGTTTCCTT 
TATGTCTCTT GTTCTTGTTA TTATTAAAAG GCAAAGTTGT TTAAATGAAA 
TATTGAGG

Gene models with high sequence identity

AT2G47790.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	WD40 repeat-like-containing domain	3.1e-31
HMMPfam	WD40 repeat, subgroup	4.8e-08
HMMPfam	WD40 repeat, subgroup	0.0015
ProfileScan	WD40 repeat 2	11.578
ProfileScan	WD40-repeat-containing domain	18.484
Gene3D	WD40/YVTN repeat-like-containing domain	1.2e-26
HMMPanther	UNCHARACTERIZED	3.4e-31
HMMSmart	WD40 repeat	1.3e-05
HMMSmart	WD40 repeat	27
HMMSmart	WD40 repeat	0.00011
HMMSmart	WD40 repeat	290

See the detailed result >

AT2G47790.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 11741 Blast hits to 7668 proteins in 457 species: Archae - 10; Bacteria - 2663; Metazoa - 3454; Fungi - 3073; Plants - 916; Viruses - 0; Other Eukaryotes - 1625 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-33-O22 introduced

F09237 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found