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RAFL09-34-B19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06039)

full reading [+] show sequence

Nucleotide sequence: RAFL09-34-B19 - full reading 
GGAGCAACAG TCATCAAAGA GCCAATGGCT TCTTCAGGTT TCAGCGGCGA 
TGAAACTGCG CCTTTCTTCG GATTCCTCGG CGCCGCCGCT GCGCTCGTTT 
TCTCCTGTAT GGGAGCAGCG TACGGGACGG CGAAGAGTGG AGTTGGAGTT 
GCGTCGATGG GAGTGATGAG ACCTGAACTT GTTATGAAAT CGATTGTTCC 
TGTTGTCATG GCTGGTGTGT TAGGTATTTA TGGTTTGATC ATCGCTGTTA 
TCATCAGTAC TGGGATTAAC CCCAAGGCCA AGTCTTATTA CCTATTCGAT 
GGCTATGCTC ATCTCTCTTC TGGGCTAGCT TGTGGTCTTG CTGGTCTCTC 
TGCTGGTATG GCTATTGGAA TCGTCGGTGA TGCTGGTGTT AGAGCGAATG 
CGCAACAACC GAAGCTGTTT GTGGGAATGA TTCTGATTCT CATCTTTGCG 
GAAGCGCTTG CACTGTATGG TCTCATTGTT GGTATCATCC TCTCATCTCG 
AGCTGGTCAG TCTAGAGCTG AGTGAAAGAA GTGGAGACTT ATTGTTATTA 
TCATCATGTC TCATATGAGA AGTTTCATGT GATGTGTAGC TTCTCCTTTC 
AGTTCTTTTT CGTGAGTTTG AGTTCTGTTA TTATTAGACA CACTTGTGTA 
ACTTGGGTGA AATTATATGA CTCGGTACCA AAAGCATTCT CATTTGCATT 
ACAAATCCCT CAATTAAGTA CTAATCAATA CAACTCTAAA GTCTCTAAT

Gene models with high sequence identity

  1. AT1G75630.1 [+] show detail - vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily ATPase, F0/V0 complex, subunit C 7.4e-20
superfamily ATPase, F0/V0 complex, subunit C 6.2e-07
FPrintScan ATPase, V0 complex, proteolipid subunit C 8.4e-59
FPrintScan ATPase, V0 complex, proteolipid subunit C 8.4e-59
FPrintScan ATPase, V0 complex, proteolipid subunit C 8.4e-59
FPrintScan ATPase, V0 complex, proteolipid subunit C 8.4e-59
HMMTigr ATPase, V0 complex, proteolipid subunit C, eukaryotic 8.4e-71
HMMPfam ATPase, F0/V0 complex, subunit C 1.3e-13
HMMPfam ATPase, F0/V0 complex, subunit C 1.8e-18
HMMPanther VACUOLAR ATP SYNTHASE PROTEOLIPID SUBUNIT 1.1e-77

See the detailed result >

AT1G75630.1

Model type
Protein coding
Short Description
vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4
Curator Summary
vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA,
Computational Description
vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 4 (AVA-P4); FUNCTIONS IN: ATPase activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, F0/V0 complex, subunit C (InterPro:IPR002379), ATPase, V0 complex, proteolipid subunit C, eukaryotic (InterPro:IPR011555), ATPase, V0 complex, proteolipid subunit C (InterPro:IPR000245); BEST Arabidopsis thaliana protein match is: ATPase, F0/V0 complex, subunit C protein (TAIR:AT1G19910.1); Has 2720 Blast hits to 2495 proteins in 678 species: Archae - 169; Bacteria - 703; Metazoa - 633; Fungi - 466; Plants - 344; Viruses - 0; Other Eukaryotes - 405 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-34-B19 introduced

  • F11929 - seed::increased size / seed::increased length
  • F19147 - seed::increased size
  • F27546 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found