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  3. RAFL09-34-E14

RAFL09-34-E14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06049)

full reading [+] show sequence

Nucleotide sequence: RAFL09-34-E14 - full reading 
AGAGTTGGAA TTTTCCCGGG GAAGCTCTTT TCAATGGAGG TCCTTGCGAG 
CTCTTCATTA TCCCCAATTT CTTTTACTAA GCCTAACAAA ATAAACCCTA 
ATTTCTCAAT CCAGGTGAAA TTGTGGGTAA AACAACCTCC AAAGATTTCA 
AAAGCTAGCA AATTTAGTTA TGCTCGTAGT CGTAGTAACA TTTCAAGGAG 
CAATGCAGCA AACCCAGGAG TCGTGTTCGT CTGTAATAGA TTTCTGTGTG 
TTATCGAAAG AAATGATCAG AGGAAATTAT CTGGGAAGGT TATGATGAAA 
TCTTCTGTTA ATTTCAGACA GAATCTCTCT GTTGCATTAG TTCGGATCGT 
TTCTGTTCTG CTTGTCTCTT CCATTTCTGT TGTTACCACT GATTCACCAC 
CATCATGGGG TCTTACTGAA GAGAATCTTC TCTTCCTCGA GGCTTGGAGA 
ACAATTGATC GTGCTTATAT TGATAAAACC TTTAATGGAC AAAGCTGGTT 
TCGTTACAGA GAGACTGCTT TACGAAATGA GCCTATGAAC ACTCGAGAAG 
AGACATACAT GGCTATCAAG AAAATGGTGG CAACACTAGA TGATCCTTTT 
ACTCGATTCT TGGAGCCCGG AAAGTTCAAG AGTTTGCGGT CGGGGACTCA 
AGGGGCGGTT ACGGGTGTTG GGCTGTCGAT AGGTTACCCC ACTGCATCAG 
ATGGACCACC AGCTGGGCTT GTTGTTATAT CAGCTGCTCC AGGAGGTCCT 
GCAAATAGGG CGGGGATATT ACCTGGCGAT GTTATTCAAG GAATTGATAA 
TACAACCACA GAAACTCTTA CCATATACGA TGCTGCACAG ATGTTGCAGG 
GACCTGAAGG AAGTGCAGTG GAGCTAGCGA TTCGCAGTGG ACCTGAAACG 
AGACTCTTAA CTTTGACGCG AGAGCGGGTT TCTGTGAATC CAGTGAAGTC 
AAGATTATGT GAACTTCCTG GTTCTGGGAG TAACTCCCCT AAGATTGGCT 
ATATCAAGCT AACAACATTC AATCAAAATG CTTCTAGTGC GGTAAGGGAA 
GCTATTGAAA CCTTGAGAGG CAACAATGTA AACGCATTCG TCTTGGACCT 
TCGAGACAAT AGTGGAGGTT CTTTCCCAGA AGGAATTGAG ATTGCTAAAT 
TTTGGTTAGA TAAAGGAGTG ATTGTGTATA TTTGCGATAG TCGAGGTGTT 
AGAGATATAT ATGATACTGA TGGAAGCAAT GCTATAGCAA CCTCTGAGCC 
TCTTGCCGTT CTTGTTAACA AAGGCACCGC GAGTGCCAGC GAGATATTAG 
CAGGTGCCTT GAAAGATAAT AAACGTGCTC TGGTTTATGG AGAACCAACT 
TACGGAAAAG GCAAGATACA GTCGGTTTTT GAGCTTTCTG ATGGTTCGGG 
CTTGGCAGTA ACAGTTGCTC GATATGAAAC ACCAGCTCAC ACAGATATAG 
ACAAAGTCGG TGTAACTCCT GATCATCCAT TGCCAAAGTC GTTTCCGAAA 
GATGAAGAGG CGTTCTGTGG ATGCCTTAAG GATCCTACAG CTGCTTGTTA 
TCTCAATCAA GGCCTACTTT TTTCTAGATG ATTTTGTTTT GTTCAAACTT 
TGTTCTGACA ACATATGACT AAAATTTATT GACTCAAGCT TTGTACTTTT 
GAAGATTCGC CATAGCTTTA GCTAATCGAA ACCAGAAATT TC

Gene models with high sequence identity

  1. AT4G17740.1 [+] show detail - Peptidase S41 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Peptidase S41A, C-terminal peptidase 3e-84
superfamily ClpP/crotonase 7.7e-76
superfamily PDZ/DHR/GLGF 1.6e-17
ProfileScan PDZ/DHR/GLGF 11.843
Gene3D no description 1e-29
Gene3D no description 1e-46
HMMPanther SERINE PROTEASE HTRA2 0.00014
HMMPanther SERINE PROTEASE FAMILY S1C HTRA-RELATED 0.00014
HMMSmart PDZ/DHR/GLGF 2e-13
HMMSmart Peptidase S41 7.4e-96
HMMPfam Peptidase S41 1.5e-50
HMMPfam PDZ/DHR/GLGF 1.1e-07

See the detailed result >

AT4G17740.1

Model type
Protein coding
Short Description
Peptidase S41 family protein
Computational Description
Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9204 Blast hits to 9194 proteins in 1993 species: Archae - 0; Bacteria - 5702; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-34-E14 introduced

  • F05931 - Specific phenotypes were NOT observed.
  • F18914 - Specific phenotypes were NOT observed.
  • F29216 - seed::increased size / seed::increased length / seed::decreased width
  • F29736 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found