1. Home
  2. Full-length cDNAs
  3. RAFL09-34-G03

RAFL09-34-G03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06054)

full reading [+] show sequence

Nucleotide sequence: RAFL09-34-G03 - full reading 
ACTCTCAAGT CTCTCTAAGC CACAAACCAC TGAAGAAGAA TCCATCTAAG 
AGCTGTTAAA AATTGATGAA GCTTCGAATA TGAAGAAATT GAAAAGCTAT 
TACATGCAAG TTCGTAACCA GCAACAATCT CTTGACCGAA AATGGATTCT 
TCCATTAGCA ATCGGATCCA TTTGTTCTCT CTTTCTCTTG TTGCTAACGA 
ACTTAGCTTC TTCTTCTGGT CAAACTCGTT TGATTCCATT TTCAGTTTAC 
GGATTTAGAT CCTCCGTCTT CGTCGAATCC AAGATAAATC CAGTATCCGT 
CTCACTCACC GTCTCCGTCT CTCCTCCTCC GCCGCCACGT CTCGCTTATC 
TAATCTCCGG CTCCTCTGGT GACGGTCAGA TGCTGAAACG AACTCTAATG 
GCGCTTTATC ATCCCAACAA CCAGTACGTT GTTCATCTCG ATCGGGAATC 
TTCACCGGAG GAACGATTGG ATCTCAGTGG TTTTGTGGCG AATCATACTC 
TGTTTCAGAG ATTTCAAAAT GTTCGGATGA TTGTTAAGGC TAATTTCGTT 
ACGTATCGTG GTCCAACTAT GGTGGCTAAT ACACTTCACG CTGCAGCGAT 
TTTGCTTCGT GAAGGTGGTG ATTGGGATTG GTTCATCAAT CTCAGTGCCT 
CTGATTATCC TCTCGTAACA CAAGATGATC TGTTGCATAC GTTTTCGTAT 
CTTCCTCGAG ATCTCAATTT CATCGATCAT ACAAGCAACA TTGGCTGGAA 
AGAGTCTCAT AGAGCAAAGC CTATAATTAT TGATCCTGGT TTGTATATGT 
CAAAGAAAGC TGATGTTTTC TGGGTTTCAC AGAAGAGAAG TATGCCTACA 
GCTTTCAAAC TCTTCACAGG ATCTGCGTGG ATGATGTTAT CTAGACCTTT 
TGTGGATTAT TTCATATGGG GATGGGATAA TCTTCCTCGA ATTGTGTTAA 
TGTATTACGC AAACTTCCTT TCATCGCCAG AAGGTTACTT CCACACTGTG 
ATTTGCAATG CTCGAGAGTT TACCAACACA ACGGTTAACA GTGACTTACA 
TTTCATCTCA TGGGACAATC CTCCAAAGCA ACATCCTCAC CATCTTACAT 
TAGATGATTT CCAGAGAATG GTGGACAGTA ACGCTCCTTT TGCTAGGAAA 
TTCCGTAGAG ATGAGCCTGT TCTCGATAAG ATTGATTCGG AACTATTGTT 
TCGGAGTCAC GGGATGGTCA CTCCGGGTGG TTGGTGTATT GGTACGAGGG 
AAAACGGGAG CGATCCGTGT GCGGTGATTG GTGATACGTC GGTTATTAAA 
CCTGGTCTTG GAGCTAAACG GATCGAGAAA CTCATAACTT ATTTGTTATC 
TACTGAGAAT TTCAGACCAC GGCAATGCCG GTAATGGCAA ATTAGAGTTT 
TGTCATAGAG ATGGTTACGT GGTTTTTCAC ACAAATGAAC TGTATTGATT 
ATCCGATACT TTGATATGGT TGTATAGAGA TCTTTTTGGA CTTTCTTCAT 
TTGAGAAAGT GCAGAAATTT CGGGAAAGAT CATTGATTAT TGGAATTTGT 
CTTCTATTGC CGACCG

Gene models with high sequence identity

  1. AT5G15050.1 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther GLYCOSYLATION ENZYME-LIKE PROTEIN 6.6e-241
HMMPanther Glycosyl transferase, family 14 6.6e-241
HMMPfam Core-2/I-Branching enzyme 2.9e-67

See the detailed result >

AT5G15050.1

Model type
Protein coding
Short Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 926 Blast hits to 925 proteins in 118 species: Archae - 0; Bacteria - 49; Metazoa - 525; Fungi - 0; Plants - 316; Viruses - 14; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-34-G03 introduced

  • F07245 - Specific phenotypes were NOT observed.
  • F28714 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found