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  3. RAFL09-34-O09

RAFL09-34-O09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06082)

full reading [+] show sequence

Nucleotide sequence: RAFL09-34-O09 - full reading 
ATGAACAAAA CAAACCCAGA AAGAAAAATA TCACTAACCT CATTCAAAGA 
GAGAATGGCT TGTAAAGAAA AGCCTCGTGA TCTTCAAGTT CTTTTGATCA 
TATCTATAGT TTTGAGTTGT TCTTTTGCTG TTTCTGCAAC GGTGGAAGAA 
GCTAATGCTC TTTTGAAATG GAAGTCAACT TTCACAAACC AGACAAGTTC 
ATCAAAGCTA TCTTCTTGGG TCAATCCAAA CACAAGCAGC TTTTGTACCA 
GTTGGTATGG TGTTGCCTGC TCACTCGGGA GCATTATACG GTTGAATCTT 
ACTAATACCG GTATCGAAGG TACTTTCGAA GATTTTCCAT TCTCGTCTCT 
CCCCAATCTC ACTTTTGTTG ATCTCAGTAT GAACCGTTTC TCTGGAACCA 
TCTCTCCTTT ATGGGGACGG TTCTCGAAAC TCGAATACTT CGATTTGTCG 
ATTAACCAGT TAGTTGGTGA AATCCCACCT GAACTTGGTG ATTTGAGTAA 
TTTAGATACT CTCCATCTAG TTGAAAACAA GTTAAACGGA TCGATTCCTT 
CTGAGATCGG TCGGTTAACT AAGGTTACGG AGATAGCTAT ATACGACAAT 
CTTTTAACCG GACCAATACC TTCTTCTTTT GGAAACCTTA CCAAACTAGT 
TAACCTCTAC CTCTTTATCA ATTCTCTTTC TGGTTCAATT CCTTCTGAAA 
TAGGAAACTT ACCCAACCTT AGAGAGCTAT GTCTAGATAG GAACAACCTT 
ACCGGTAAAA TCCCTTCTAG TTTCGGGAAT TTGAAGAATG TAACTCTTCT 
CAATATGTTT GAAAATCAGC TCTCTGGTGA AATCCCTCCT GAGATTGGTA 
ATATGACCGC TTTAGATACA CTTAGTCTCC ACACAAATAA GCTTACCGGT 
CCAATACCTT CTACCTTAGG AAACATCAAA ACCCTAGCCG TTCTTCATCT 
TTACCTGAAT CAACTCAATG GTTCGATTCC ACCGGAACTA GGCGAAATGG 
AATCAATGAT TGATTTGGAG ATAAGTGAGA ACAAACTCAC CGGTCCTGTT 
CCCGATTCTT TTGGCAAGTT AACCGCGTTG GAATGGTTGT TCCTACGTGA 
TAATCAGCTC TCTGGTCCCA TCCCACCGGG AATTGCTAAC TCTACAGAGC 
TCACCGTCCT GCAGCTCGAC ACCAACAACT TCACCGGTTT CTTGCCTGAT 
ACCATCTGTA GAGGTGGAAA GCTTGAGAAT CTTACGCTAG ATGATAATCA 
CTTCGAAGGT CCTGTTCCTA AAAGCTTGAG AGATTGCAAG AGCTTGATCA 
GAGTAAGATT CAAAGGGAAT AGTTTCTCCG GAGATATCTC TGAGGCTTTC 
GGAGTTTACC CGACTCTCAA CTTCATCGAT CTCAGCAACA ACAACTTTCA 
TGGACAACTT TCAGCCAACT GGGAACAAAG TCAAAAGCTG GTTGCATTCA 
TCCTCTCAAA CAACAGCATC ACTGGAGCCA TCCCACCTGA GATTTGGAAC 
ATGACACAGC TAAGTCAGCT CGATCTATCT TCCAACCGCA TCACCGGCGA 
GCTACCTGAA TCAATCAGCA ATATCAACCG TATATCAAAA CTCCAACTCA 
ACGGGAATCG GCTATCAGGC AAAATCCCTT CAGGAATCAG ACTCTTAACC 
AATCTTGAGT ATCTTGATCT ATCCTCAAAC CGATTCAGTT CCGAAATACC 
CCCAACGCTC AACAATTTGC CAAGGCTCTA CTACATGAAC CTGAGCAGAA 
ACGACTTGGA TCAAACCATC CCGGAGGGGT TAACAAAGCT ATCTCAGTTA 
CAAATGCTTG ATCTCAGCTA CAATCAGCTC GACGGAGAGA TCTCATCACA 
ATTCAGATCT TTACAAAACC TCGAAAGACT CGACCTCTCA CACAACAATC 
TCTCAGGTCA AATCCCACCA AGTTTCAAAG ATATGCTAGC ACTAACACAC 
GTCGATGTAT CACACAACAA CCTCCAAGGT CCAATTCCAG ATAACGCAGC 
GTTTCGAAAC GCACCTCCAG ATGCTTTTGA AGGTAACAAA GACTTATGTG 
GTAGTGTTAA CACCACACAA GGCTTGAAGC CATGTTCAAT CACATCCTCA 
AAGAAATCAC ACAAGGATCG AAACCTAATC ATCTACATAC TAGTTCCGAT 
CATCGGAGCA ATCATAATCC TCTCCGTCTG CGCCGGAATC TTCATCTGTT 
TCCGTAAACG AACAAAACAA ATCGAGGAGC ATACAGATTC AGAATCAGGA 
GGAGAAACAT TATCAATCTT CAGCTTCGAC GGCAAAGTCC GATACCAAGA 
GATCATCAAA GCAACAGGAG AATTCGATCC AAAATACCTA ATCGGAACCG 
GAGGACACGG CAAAGTCTAC AAAGCAAAGC TACCAAACGC AATCATGGCG 
GTGAAAAAGC TAAACGAAAC AACAGACTCA TCAATCTCAA ATCCATCAAC 
AAAACAAGAG TTTCTCAACG AAATCAGAGC ACTAACCGAG ATCCGTCACC 
GGAACGTCGT GAAACTCTTC GGATTCTGCT CGCATCGCCG CAACACGTTT 
CTGGTTTACG AGTACATGGA GAGAGGAAGC TTGAGGAAAG TTTTGGAGAA 
TGATGATGAA GCGAAGAAGT TAGATTGGGG AAAGAGGATC AACGTTGTGA 
AAGGTGTGGC TCATGCTTTG TCTTATATGC ATCATGATCG GTCTCCGGCG 
ATTGTTCACC GTGATATTAG TAGTGGGAAT ATTCTTCTCG GCGAGGATTA 
TGAAGCGAAG ATCTCTGATT TTGGTACTGC GAAGCTTCTT AAACCGGATT 
CTTCAAATTG GTCCGCCGTT GCTGGTACTT ACGGCTATGT TGCTCCAGAA 
CTAGCTTATG CGATGAAAGT GACTGAGAAA TGCGATGTGT ATAGCTTTGG 
AGTTCTAACA CTTGAAGTGA TCAAAGGAGA GCATCCAGGA GATCTAGTTT 
CAACTCTTTC ATCCTCACCT CCCGATGCAA CTCTGTCACT GAAAAGCATT 
TCCGACCACC GGCTACCGGA ACCGACACCG GAGATTAAAG AGGAGGTCTT 
AGAGATTTTG AAAGTTGCAC TTTTGTGTTT ACATTCTGAT CCACAAGCTC 
GCCCAACAAT GCTCTCTATC TCCACTGCCT TTTCTTAAGA ACTTGTCTCT 
TCTCTGACTC TCTCTAGTCT CTACCAAGCA GAAACTTTAC ACGTTGTAGT 
GTTTGTTTCT TTGATTATGG GTTAATATTT TTGTTTCATG GAATTTTAGT 
TTTTGTGATG AATTATATAA TAGTTTGCAT CTTTTGTATA TATAATGTTT 
CTTTCTTTAA TTTTTCTCAC TAATAGATAC AAAAAATATG TC

Gene models with high sequence identity

  1. AT4G08850.1 [+] show detail - Leucine-rich repeat receptor-like protein kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Protein kinase-like domain 1.7e-73
superfamily RNI-like 2.4e-67
superfamily L domain-like 9.6e-61
HMMSmart no description 380
HMMSmart Leucine-rich repeat, typical subtype 36
HMMSmart no description 250
HMMSmart no description 670
HMMSmart Leucine-rich repeat, typical subtype 20
HMMSmart Leucine-rich repeat, typical subtype 280
HMMSmart no description 770
HMMSmart Leucine-rich repeat, typical subtype 36
HMMSmart no description 2.1
HMMSmart Leucine-rich repeat, typical subtype 38
HMMSmart no description 80
HMMSmart Leucine-rich repeat, typical subtype 1.3
HMMSmart no description 15
HMMSmart Leucine-rich repeat, typical subtype 26
HMMSmart Leucine-rich repeat, typical subtype 6.5
HMMSmart Leucine-rich repeat, typical subtype 170
HMMSmart Serine/threonine-protein kinase domain 1.2e-40
HMMSmart Tyrosine-protein kinase, catalytic domain 2.5e-25
HMMPanther RECEPTOR PROTEIN KINASE 0
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 0
PatternScan Protein kinase, ATP binding site 0
PatternScan Tyrosine-protein kinase, active site 0
HMMPfam Serine/threonine-protein kinase-like domain 4.2e-48
HMMPfam Leucine-rich repeat 0.013
HMMPfam Leucine-rich repeat 0.16
HMMPfam Leucine-rich repeat 0.0051
HMMPfam Leucine-rich repeat 0.63
HMMPfam Leucine-rich repeat 0.00038
HMMPfam Leucine-rich repeat 0.8
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.000000036
FPrintScan Toll-like receptor, leucine rich repeat-containing 0.0000099
FPrintScan Toll-like receptor, leucine rich repeat-containing 0.0000099
ProfileScan Protein kinase, catalytic domain 37.531
Gene3D no description 1.5e-48
Gene3D no description 4.1e-43
Gene3D no description 4.3e-64
Gene3D no description 3.9e-19
Gene3D no description 1.1e-42

See the detailed result >

AT4G08850.1

Model type
Protein coding
Short Description
Leucine-rich repeat receptor-like protein kinase family protein
Computational Description
Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT1G35710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-34-O09 introduced

  • F26926 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found