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  3. RAFL09-35-B14

RAFL09-35-B14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06092)

full reading [+] show sequence

Nucleotide sequence: RAFL09-35-B14 - full reading 
GCTAAAGGTA AAAGGCGGAA CAACAAAAGA AACCCTAGCT TCCCTTTGTA 
CCTCTCTCTG TTCCAAACCA TGTCGAAGAG AAAGACCAAA GAGCCAAAGG 
TTGAGAATGT GACTCTTGGA CCAGCTGTTC GTGAAGGAGA GCAAGTCTTT 
GGAGTTGTTC ACGTCTTTGC TTCATTCAAC GACACTTTCA TTCACGTGAC 
TGATTTGTCT GGACGGGAAA CACTTGTTCG CATCACTGGT GGAATGAAGG 
TGAAAGCCGA CAGAGATGAG TCCTCACCTT ATGCTGCTAT GCTTGCGGCA 
CAAGATGTTG CTCAGCGATG CAAGGAACTT GGAATCACTG CCATACATGT 
GAAACTCCGT GCCACTGGTG GTAACAAGAC CAAGACCCCT GGACCTGGTG 
CTCAGTCTGC TCTAAGAGCC CTTGCCCGTT CTGGCATGAA AATTGGTCGC 
ATTGAGGATG TGACTCCAAT CCCAACCGAC AGTACCCGCA GAAAGGGTGG 
AAGAAGAGGA AGGAGGCTCT GAGTTATTTG GCCTCTCGTT GGATCTCCTT 
ATGTAGCTTT CTCAATGTTT CATTTTGTTT TTTCTTAGTT TGAAAAGAGT 
TTTGGAATTA CTATGCTTTG TTATAGTCTC AACTCTGAAC AGCTTTGGAT 
CTTTTTCTGT ATGACCATAA GATATTCAAA AATTGGTAGT CATTTTATCT 
CACAAAAAAA CCTTGAATTT GTGCTGTATG ATTTTGTAAA GTCTT

Gene models with high sequence identity

  1. AT3G52580.1 [+] show detail - Ribosomal protein S11 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 40S RIBOSOMAL PROTEIN S14 2e-97
HMMPanther Ribosomal protein S11 2e-97
HMMPIR Ribosomal protein S11 2.9e-50
Gene3D Ribosomal protein S11 2.4e-35
superfamily Translational machinery components 6.2e-39
HMMPfam Ribosomal protein S11 8e-42
PatternScan Ribosomal S11, conserved site 0

See the detailed result >

AT3G52580.1

Model type
Protein coding
Short Description
Ribosomal protein S11 family protein
Computational Description
Ribosomal protein S11 family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971), Ribosomal S11, conserved site (InterPro:IPR018102); BEST Arabidopsis thaliana protein match is: Ribosomal protein S11 family protein (TAIR:AT3G11510.1); Has 8774 Blast hits to 8774 proteins in 2899 species: Archae - 250; Bacteria - 4863; Metazoa - 589; Fungi - 162; Plants - 729; Viruses - 0; Other Eukaryotes - 2181 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-35-B14 introduced

  • F17503 - Specific phenotypes were NOT observed.
  • F21550 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found