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  3. RAFL09-35-H19

RAFL09-35-H19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17701)

full reading [+] show sequence

Nucleotide sequence: RAFL09-35-H19 - full reading 
GAACCAGAAG AGAGAGAGAG AGAAAAAAAA AGAAAGAAAC TCAAATTTCT 
CAAGTAAATC CAAGAGAGAG AAAGAGAGAA GGAAAAAGAT CTATCTTTTT 
TCCTCTGAGA GAGAGCAAAA ATGGTGGAAG TGATACCAAA ACATATCAAA 
GATGTTTGGG ATAGGTGGAA CATAAGAGGA GCAGTCATTC TAAGTCTTAC 
CCTTCAAGCC ATTCTCATTT GCTTCTCTCC TCTAAGGAAA CGTACACCAA 
GAAGGCTCTT GATCGTGCTT GTTTGGTCCT CTTATCTCTT AGCAGATTGG 
TCTGCTAATT TCGCTGTTGG TCTTATCTCC AAGAATCAAG GTAAAGATCT 
CAAACCTGAT GACCCTCCAC AGGACAAAAA GGTAATGGCT TTATGGGCAC 
CATTCTTGCT CTTGCATCTT GGTGGACCAG ACACTATCAC AGCTTTCGCG 
CTTGAAGATA ACGCTCTCTG GCTACGACAT GTCTTTGGGC TTGTCTTTCA 
GGCAATTGCT GGTGTCTATG TGGTTGTCAT GTCTCTGCCC AATAGCCTTT 
GGGTGGTTAT AGTCTTAGTG TTTGTTTCTG GGACTATAAA GTATCTGGAG 
AGGACAACGG CTCTGTATAG TGCAAGTTTG GACAAGTTTA GGGACTCTAT 
GATTCAAGCA CCAGATCCAG GACCAAACTA CGCCAAGCTC ATGGAGGAGT 
ACAAGGCCAA GAAAGAGGCA AGACTTCCCA CCAAGATCGT TCTGATTGAT 
GAGCCTGACA AAGAAAATAG GCCTAAGAAG TTAGAGCATC CAGCATTAGC 
TTCGAAGAAA AGAAAAAAAG ATTTGACCGA TCTTGAGATT GTTCAGTATG 
CTTACAAATT CTTCAACACA TTCAAGGGCC TTGTAGTCAA CCTTATCTTC 
AGCTTCAGGG AGCGTGACGA GAGCCTAGAG ATCTTTGAGA ATTTAAATGA 
TCCAGAGGAA GCTTTGAGGA TCATTGAGAT TGAGCTCGGC TTTCTCTATG 
ATGCTCTATT CACCAAGATC GCGATTCTTC ATACCGGTAT TGGAACTGTC 
TCACGGGTCT TTGCTTCTGG TACCCTTGTG GCTGCATTCA TCATTTTTCA 
TAAGAAACCT AACAAAGGCA CAGATTTTCA TGGAGCTGAT GTCGTAGTTA 
CTTATACGCT GTTTGCAGTT GGCCTAGTTT TGGATTTCAT ATCCATCCTT 
TTGTTCCTGT TCTCAGACTG GACATGTGCT GCATACAGTA GTTTGAAGGA 
CGATCCGGAT GAGCTTCAAT CATGGCAAGA GAGATGTTTT AACTGGTTAC 
TTAAATTCAG AAAGCTGCGT TGGACGCCGC AAGAGTGCCA CAAGACTGGT 
ATGCATAAGT GTACCAAAGA AGGTTTGAAA CCGTGTATCA TGAAAGGTGC 
TGATAAGAAG GAAGGTGGCA ATAAGAATGA AGGTGGCAAT AAGAAGGAAG 
GTGACGATAA GAAGGAAGCT GCTGATAAGT GTTCATTGGT AGATAAGCAT 
GACGTTCTCA CAACGCGTTT CTTCCTTCGG AGGTGGAGTG GAAGCATCAA 
CGTTTTTAAC TTTATAGCGT ACGCCACAAA AGCAGATGTA GAGAGGATCC 
ACGACGCCAG AGGTAGTTTC CGCCGCTACT CATGGAAGAT CATAACTTTT 
CCATTCAAAA AACTCAACTT CGTCATAAAG AAAATTTTTG GATCGATTGT 
CAAGTTGATC AATGAAGTGC ACAGACGGAT CAGCCACGAA GTCAATGCGT 
TATCAAGAAA GCATCTTTGG GCTCGTCGTT TTCTTTACCC TATCTATTTC 
GAGTTCATAT CCCGCATCCC TCACTTCATC AAATCAGTGT GGGATATCCT 
CAGTGAGTTC TTTGACATCT CGGATACGCT TGATATGGTC CACAAGACAC 
TATTTGTACA TGGAGAGCCC ATGACGAGAG AATTGTGGAA GTTCATCTTC 
GAAGAGCTGA AAAACAAATC AAAGTATGGA GACAGTCCTG AAAATGCCAA 
GAGGATATCT TTGGCTCGGG GAGAATGGAC TTTAAGAGAG AACCTGCCGG 
TGGATGCAGA ACGTGAAAAA CTGGTACGCT ATGTCACAAA GGTCGATTAT 
GATCAGAGTC TTTTGATGTG GCACATCGCA ACCGAGCTCT GTTACCAACA 
ACATGAGAAA GAGACTATCC CAGAGGGTTA TGATGAACAA CGCAAGCATT 
ACAGTAACCG CGAGTTCAGC AAAATCATCT CAGACTACAT GATGTATCTC 
CTGATCTTGC AACCCGGTCT GATGTCCGAG GTTGCTGGAA TTGGGAAGAT 
CAGATTCAGA GACACATTGG CTGAAACTCA CAAGTTCTTC CAGAGGAGGC 
ATATCGAGAA CGATAGAAGC GTGGAGACAG CCACCCTAAA TATTCTGGAC 
GTCGAAAGTG AAATTGAACC AATGGGAGTG AAGGGAGATC GAAGCAAGTC 
TGTATTGTTT GACGCGAGCA GGCTAGCCAA AGACCTTGCA GAGATGGAGA 
AGACACACAA CAAAGATAAA TGGGAGATAC TGAGTAAAGT GTGGGTGGAA 
CTTCTCTGTT ATGCAGCCTG TCATTGCGAC TCTACGGCTC ACGTGGAGCA 
ACTCAGCAGA GGCGGAGAGC TCATAAACTT CGTGTGGCTT CTAATGGCTC 
ACTTCGGACT AACAGATCAG TTCCAGATCA ACAAAGGAGA TGCCAGAGCC 
AAACTCATCA TAGGCAAGTG AGAGTGAGGA AGAACAACAT TCCCCGTAAT 
CTAAATTCGT TCTGCTTTTG TATTTCTTTC TACTTTCTTC TGCTCAAAAC 
AATGAACTCT TCTTTTCTGC ATAAAGATGT GACATTTGTA AGCTTTTTGT 
GATGAAAATT ATCCCATTTA TCCTTTTTAT ATTCCAACAA GAGTCATGAC 
GAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G45470.1 [+] show detail - Protein of unknown function (DUF594)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT5G45470.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF594)
Computational Description
Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45460.1); Has 1360 Blast hits to 854 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-35-H19 introduced

  • F24018 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found