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RAFL09-35-N14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06121)

full reading [+] show sequence

Nucleotide sequence: RAFL09-35-N14 - full reading 
GAGATAATAA AGAGAGAAGC AAAAAAGAAT TTTTATAGAA AGAAAGGAAA 
AATCAGAAAA GGAGAGAAAA ATTAAAAAAG TCTCTCTTTT CTCTTTTTCT 
TCTTCGTCTC CCATATTCTC CGATCAAAAA TATATTTCTC TCTCACTTTC 
CTTGGTTTTC TCGGCGGCTT CTTCTTCTCC TATTTCTCCC TCAAATCGTT 
TTCTCCAGTT TTCTTGGGAT AAATCTTCCT CCTTTCTGCA GACGCCATGT 
CGGACAAAGG TCGTCCCTTG CCAAAATTTG GTGAATGGGA TGTGAATGAT 
CCAGCATCAG CAGAAGGTTT TACAGTGATA TTCAACAAAG CTAGGGATGA 
GAAAAAGACC GGTGGCAAAC CGGGATCACC CGGTAAATCC AGTGAGGGTC 
ATGTTAAATC TGGAGGAGGA GATCCTAGTA AACCTCAGCC TAAAAAATGG 
CTCTGCTGCA TGCAAGCTCC AGCTGTGGAC TCTTGACAGA CACAAAGATG 
GATTTGCTTG CTGCTAAAAA AAAAGTCACA GTGCTTACAC ATCTAAAAGC 
AATGGTTCTT TTTATGTTTT ATTGTCGTCT TTCTTGAAAT TACCCACACA 
CACAAAAAAA AAAGGTTCCT AAGATGATTT GGAGCTCACC CACCTTTAGT 
ATCACGATTA TGATTCCTTC TTCTTTGAAG TTGTTTCTTC TTCTTAAAAT 
GCTGTAAAAT CGTGTCTCCA TTTTATTGGA AAAAAAAAAG GAAGAAAAAC 
GAAAAAAAAC ACAGTTACTG TGTCTATATG GAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT5G55850.1 [+] show detail - RPM1-interacting protein 4 (RIN4) family protein
    E-value: 0; Score: 99.49

 

InterPro Scan Digest

See the detailed result >

AT5G55850.1

Model type
Protein coding
Short Description
RPM1-interacting protein 4 (RIN4) family protein
Curator Summary
NOI protein
Computational Description
NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 284 Blast hits to 283 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-35-N14 introduced

  • F08106 - Specific phenotypes were NOT observed.
  • F16124_76 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found