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  3. RAFL09-36-A20

RAFL09-36-A20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06127)

full reading [+] show sequence

Nucleotide sequence: RAFL09-36-A20 - full reading 
AAAAAGAGAG AATCTTTCCG GTGAATGGGA AATGGCAAGA AGAAGGATAC 
GAGTACGATG AAGTTGAGTT AGAGCGGGAG AGAGAGACAT ACCGTTGACC 
ACTAAAGACG AGAGCTTTAG AGAGAGACGC AACAATGGAG CTGAATATTT 
CCGAGAGTCG AAGCAGATCA ATTCGTTGCA TTGTGAAACT TGGAGGTGCG 
GCAATTACTT GCAAAAACGA GCTGGAGAAG ATTCACGATG AAAATCTGGA 
GGTCGTGGCG TGTCAGTTAC GTCAAGCTAT GTTGGAGGGT TCAGCTCCAA 
GCAAGGTTAT TGGCATGGAT TGGAGCAAGA GACCTGGAAG CTCTGAGATT 
TCTTGTGATG TGGATGACAT AGGGGATCAA AAGTCTTCTG AGTTTAGTAA 
ATTTGTTGTG GTTCATGGCG CTGGTTCCTT TGGGCACTTT CAGGCCAGTA 
GATCTGGGGT TCACAAAGGA GGACTTGAGA AACCTATTGT CAAAGCTGGT 
TTCGTTGCTA CTCGTATATC TGTGACAAAT CTTAATCTTG AAATTGTACG 
AGCACTAGCC CGAGAGGGCA TTCCTACGAT AGGCATGTCT CCATTTTCAT 
GTGGTTGGTC AACCTCCAAA AGAGATGTGG CTTCTGCAGA TCTAGCAACC 
GTAGCTAAAA CCATAGACTC AGGATTTGTC CCTGTTCTCC ATGGAGATGC 
AGTGCTGGAC AATATACTGG GCTGCACCAT ATTGAGTGGT GATGTTATCA 
TCCGTCATCT TGCAGATCAT TTGAAGCCAG AATATGTTGT CTTTCTCACA 
GATGTACTAG GTGTCTACGA TCGACCACCT TCACCTTCAG AGCCCGACGC 
GCTGCTCTTG AAAGAGATCG CTGTTGGAGA AGATGGAAGC TGGAAGGTTG 
TGAATCCACT GTTGGAGCAC ACAGACAAGA AAGTTGACTA CTCTGTTGCG 
GCGCACGATA CAACCGGTGG AATGGAAACG AAGATATCAG AAGCTGCTAT 
GATTGCAAAA CTTGGAGTCG ATGTCTACAT TGTGAAGGCT GCGACAACTC 
ATTCACAGAG AGCACTAAAC GGTGATTTGA GAGATAGTGT TCCTGAAGAT 
TGGCTTGGTA CTATCATCAG ATTCTCAAAG TAGAATAATC TCCTGACAAA 
TACACTAATT CCAGTTCCTC AACAAAGGAA AGCATTGACC TTTTCTTGCT 
ATTACTGTTT TACCAGACTT TGTGCAAGGA ATACAAAATC GTGTAATGTC 
AAAACCAGTT AAAATGTCGA ATACTATCGC AGCCTGTGTA ACTCTATGTT 
TCCACAAGTA TTCAATCACA TATCTTACAC TGTTATTGTC AAAAAAAAAA 
AAAAAA

Gene models with high sequence identity

  1. AT1G26640.1 [+] show detail - Amino acid kinase family protein
    E-value: 0; Score: 99.70

 

InterPro Scan Digest

Program Description E-value
superfamily Aspartate/glutamate/uridylate kinase 5e-22
HMMPfam Aspartate/glutamate/uridylate kinase 2.1e-53

See the detailed result >

AT1G26640.1

Model type
Protein coding
Short Description
Amino acid kinase family protein
Computational Description
Amino acid kinase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cellular amino acid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048); Has 592 Blast hits to 592 proteins in 236 species: Archae - 208; Bacteria - 227; Metazoa - 7; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-36-A20 introduced

  • F02409 - Specific phenotypes were NOT observed.
  • F12016 - Specific phenotypes were NOT observed.
  • F13719 - seed::increased size
  • F15639 - Specific phenotypes were NOT observed.
  • F23145 - seed::increased size / seed::increased length
  • F24517 - Specific phenotypes were NOT observed.
  • F30239 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found