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  3. RAFL09-36-L15

RAFL09-36-L15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08252)

full reading [+] show sequence

Nucleotide sequence: RAFL09-36-L15 - full reading 
AGAAACTGAT TTGATAAAAA AAAATATCTT CGTTGAAGTG AGGGTGACGA 
GAAGTTTCTG CTTTCATCAA TTAAAGGTTT ACGCGTGAAG CAGATCATCA 
GCAATGGCGG CGTCGCAAGA TAAGTTGGAT AAGATGAAAC TTAGGCAAGA 
TTACCGGAAT TTATGGCACT CCGATCTCAT GGGCACCGTC ACCGCCGACA 
CTCCCTATTG CTGCATCTCG TGTCTGTGTG GACCTTGTGT GTCATACATG 
CTTCGGAGAA GAGCACTTTA CAATGACATG TCAAGGTATA CTTGCTGTGC 
TGGATATATG CCCTGTAGTG GAAGGTGTGG AGAAAGCAAA TGTCCTCAAC 
TTTGCCTTGC CACTGAGGTC TTCCTTTGCT TCGGAAACTC TGTGGCCTCT 
ACCCGCTTTC TTCTGCAGGA TGAATTCAAC ATCCAGACAA CACAATGCGA 
CAATTGCATA ATTGGATTTA TGTTCTGCCT CAGCCAAGTT GCTTGCATAT 
TCTCTATAGT TGCTTGCATT GTTGGTAGTG ATGAACTTTC CGAGGCTTCT 
CAGATACTCT CTTGCTGTGC TGATATGGTC TACTGCACGG TCTGCGCATG 
TATGCAGACA CAACACAAAC TTGAGATGGA CAAAAGAGAT GGAGTGTTTG 
GATCGCAGCC AATGGGTGTG CCACCAGCTC AGCAGATGTC TCGTTTTGAT 
CAACCTGTCC CTCCTCCAGT CGGATACCCT CAGTCCTATC CACCGCCTGC 
TCAAGGCTAC CCTCCTGCAT CTTACCCGCC TCCCGGTTAT CCTCAGCATT 
AAGAAATTTA ACCAGTATCT TCATTTTATG TGTCAAAGTG TTGTTGTTAC 
TTGGTTTAGG TGTGCAGAAC TATTATATTG TTCAGCTTTG TCCTCTGCTT 
ATTTCTGCGA TTTATTTATT TTGAGGTATT GGTACTCTGG TTATGTCTGA 
AAAGCTTTTG CTATCATCAA CTGGTTTGTT GACTTTGGTA TTTAAGTAAA 
GAAAAAGAAC AACATATGTA TTAGCTAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G63830.1 [+] show detail - PLAC8 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G63830.1

Model type
Protein coding
Short Description
PLAC8 family protein
Computational Description
PLAC8 family protein; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G41390.1); Has 476 Blast hits to 386 proteins in 125 species: Archae - 0; Bacteria - 22; Metazoa - 109; Fungi - 21; Plants - 191; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-36-L15 introduced

  • F16409 - Specific phenotypes were NOT observed.
  • F18540 - seed::increased size / seed::increased length
  • F29829 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found