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  3. RAFL09-37-B08

RAFL09-37-B08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08259)

full reading [+] show sequence

Nucleotide sequence: RAFL09-37-B08 - full reading 
AAAACCTCAA CGAACTCCTT CCATGGCAGC AGGACTATCA ACAATCGCCG 
TAACACTCAA ACCACTCAAC CGCTCTTCTT TCTCCGCAAA CCACCCTATA 
TCCACCGCAG TTTTCCCTCC ATCTCTAAGA TTCAACGGCT TCCGACGTCG 
AAAGATTCTC ACCGTTTGTT TCGTCGTGGA AGAACGGAAA CAAAGCTCTC 
CCATGGACGA TGACAACAAA CCAGAAAGCA CGACAAGCTC TTCTGAGATC 
TTGATGACGT CGCGGCTTCT CAAGAAAGCG GAGAAGAAGA AATCAGAGAG 
GTTCACTTAT TTAATAGCAG CTGTGATGTC GAGCTTTGGT ATCACTTCTA 
TGGCTATAAT GGCTGTTTAT TACCGATTTT CTTGGCAAAT GAAGGGAGGT 
GAAGTGTCTG TGTTAGAGAT GTTTGGTACA TTTGCTCTTT CCGTTGGTGC 
TGCCGTTGGG ATGGAGTTTT GGGCAAGATG GGCTCATAGA GCTCTTTGGC 
ATGATTCTTT ATGGAACATG CATGAGTCAC ATCACAAACC AAGAGAAGGA 
GCGTTTGAGT TAAACGATGT GTTTGCTATA ACAAACGCGG TTCCTGCGAT 
TGGTCTACTC TATTATGGAT TCTTGAATAA AGGACTTGTT CCTGGTCTCT 
GCTTCGGTGC CGGACTGGGA ATAACGATGT TTGGAATGGC TTACATGTTC 
GTTCACGATG GACTTGTGCA CAAGAGATTC CCTGTAGGTC CCATTGCCAA 
CGTTCCTTAC CTTCGAAAGG TCGCCGCCGC TCACCAGCTA CACCACACAG 
ACAAATTCAA AGGTGTACCA TATGGGCTGT TTCTTGGACC AAAGGAAGTA 
GAAGAAGTGG GAGGAAAAGA AGAGTTGGAG AAAGAGATAA GCCGGAGAAT 
CAAATTATAC AACAAGGGTT CTTCTACCTC TTAATTGCTA CAAACCCAAT 
TTTACTTCTT TGATGTTTTT GTAATACATT TTGGGACTAG TCTTTCTTTT 
AGTATATATA AAAAATGACG TAGAAGAAAG AGTCAGGCTA ATAAAGATTT 
AGAAAAACAT AAAGAAACAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT5G52570.1 [+] show detail - beta-carotene hydroxylase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT5G52570.1

Model type
Protein coding
Short Description
beta-carotene hydroxylase 2
Curator Summary
Converts β-carotene to zeaxanthin via cryptoxanthin.
Computational Description
beta-carotene hydroxylase 2 (BETA-OHASE 2); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: beta-hydroxylase 1 (TAIR:AT4G25700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-37-B08 introduced

  • F08039 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found