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RAFL09-37-F01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06152)

full reading [+] show sequence

Nucleotide sequence: RAFL09-37-F01 - full reading 
AACTTTTTCA AAAAAAGGAA AAAAAACAGA GCTCACTCAT TATTATCTCT 
CTAAAAACCC TAGCTTTCTC CATGGGCTTT CCCGTAGGTT ACACAGAGGT 
TTTCTTACCG AAGCTTTTCG TACAAACGCT TTCGATTCTC GGATTCATCA 
GAACCATCGT CTTCTCTATC TTCCGCTTCT TGGGTCTCTC AGATTTTCTC 
GAAATGGATC AAACCTGGCC CGATTACACA TCGTACCCGA CCCGAATACC 
CGAAACCCGC TCACCTTTCT CCGCACTCCT AATTAGAGAG ATCCTACCGG 
TTATCAAATT CGAAGAGTTA ACGAATTCCG GCGAAGATCT ACCGGAAAAC 
TGCGCCGTTT GTCTATACGA ATTCGAAGGA GAACAAGAGA TCCGGTGGCT 
GAGAAATTGC AGACATATAT TTCACCGGAG CTGTCTTGAC CGTTGGATGG 
ATCATGATCA GAAGACGTGT CCACTTTGTA GAACACCGTT TGTTCCAGAT 
GAGATGCAAG AAGAGTTTAA TCAACGGCTA TGGGCTGCTT CTGGTGTTCA 
TGATTTTCAC TGTCCCGTGA CCGAATTATT ATAGAAGAAG CCACGCTTTT 
CTATCTTTTT CTGTGTCCCT TATGTTCTTT TTTGTTTTGA CTTTCACCCC 
TCTACTTTTG ATGTTGCTTT TTTCACCCCT CTTACTGACA TTTAGACTTG 
CCACGCTTTT ATGTGTGTAT ATACTCCTTA CATACGAAAA AAAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT3G61460.1 [+] show detail - brassinosteroid-responsive RING-H2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther RING FINGER PROTEIN 38 9.8e-12
HMMPanther RING FINGER PROTEIN 6/12/38 9.8e-12
HMMSmart Zinc finger, RING-CH-type 0.008
HMMSmart Zinc finger, RING-type 6.3e-06
Gene3D no description 1.6e-11
superfamily RING/U-box 8.6e-15
HMMPfam Zinc finger, C3HC4 RING-type 9.3e-09
ProfileScan Zinc finger, RING-type 12.43

See the detailed result >

AT3G61460.1

Model type
Protein coding
Short Description
brassinosteroid-responsive RING-H2
Curator Summary
Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
Computational Description
brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-37-F01 introduced

  • F09641 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found