1. Home
  2. Full-length cDNAs
  3. RAFL09-37-H18

RAFL09-37-H18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06157)

full reading [+] show sequence

Nucleotide sequence: RAFL09-37-H18 - full reading 
GCAAATGGAA CCACCGCCTT CTTCTCTGTC CTCCACCGCG GTGGCTTCCA 
CCTCCATCTC CGCCGCCACT GCTCCTGTTC CTCCTCCTCT ACCTCCTCAC 
GTGACTTCTT CTTACCCCGA ATCTCTCGAC TCCTCCCCTC GTTCTCGCAC 
CACCGATGGC TGGGATGACC TTCCTGCTCC TTCTGGCGGC GGCGGTGGCG 
GTGGTGGTAG CGCCGTCTCT TCTAAACTTC GTTTTATGTG TAGCTACGGC 
GGTCATATCC TTCCTCGCCC TCACGATAAG TCTCTCTGCT ACATGGGCGG 
TGACACTCGC ATCGTTGTCG TCGACCGTAA CTCCTCTCTC CCTTCTCTCA 
TCGCTCGTCT CTCCAACACG CTTCTCGACG GTCGTTCCTT CACCCTCAAG 
TACCAGTTAC CTAGCGAAGA CCTTGACTCT CTCATCTCCG TCACTACCGA 
CGAAGATCTC GACAACATGA TCGAAGAGTA TGACCGTACC ATTTCCGCTT 
CCAATTCCAC CAAACCTTCG CGTCTCCGGT TGTTTCTATT CACCTCCAAG 
CCTGAGGCTA CTCAATCTAT GGGTCAGATC CTTGAGAGCT CTGCCAAGAG 
CGACGATTGG TTCCTCAACG CACTCAATAG CGCCGGTCTT CTCAATCGAG 
GATTCTCAGA TTCTGATACT AACGTCAATC GTTTACTTGG TTTGGATGAT 
GCTCTTGCTC TCCGTTCTAA TTCCGGTGAC AACAACAATC GAGATGGTGA 
TGATGGCTCT GTTAAAAGCG CCAAGCAACA GCAACCTCCA CCGCCGCAGC 
AGCAAGAACA ACAGCAAGGA GGCCAAGATG TGAACTGCTT ACCGGATTCT 
CCGATGTTAG ATACATCCTC TTCTTTCGGC TCCACTTCTT CGTCTCCCTC 
GCTCGCCAAT TTGCCTCCGA TCCGTGTCCA TGTAGAGGAA CCAGGCGGAG 
TAAGGACTTT GCCAGATCAG AGAAATCTGG GAATTGAAGA ACAGTTCGCA 
CGATTCAACG TCGGGAACAA GCATCAGCTA CATGACGACG GATTTGCTGC 
GATCTCTTCA CCACCGCCGA TGCCTGTCAC AATCGCCCTT CCTGCTGCGC 
CTGTGACTGC AGCCACCGTC TCTAATGAGT TCCAGGCCAG GGTTTACTCA 
GATGACGAGA GATCCGATCA CGGCGTGCAG GCTGGATACA GGAAGCCTCC 
GACTCCGCGA TCGCAGCCGC AGAATCTACC GCCTCAGCAG GCTCATCAGC 
TGAAATCAAA TAGCGGTGGT GGACACGAGC TGCCATCACC CAATTCCGTT 
TCCAGTGATA GCAGTATGAG CAACCCAATG TTTCACCAAA GACCATCTGT 
CTATCAAGAA CCAATTGCTC AGATACCTTC TGGCTCTACC GTTGTTACTG 
GTATGATCAA TCCCTCAGAT CCAAGCACAC TTTTGTCACA GCATCAGAAT 
CAGGACCCAG CCTATATCCT TCACCCCCAG TTTGAGCAAC AATCTGCACA 
ATCTCAGCCA CAGCAGCAGT TCATACACAC TGCTGCTCCT CCTCAATACA 
TTCATCACCA TCCGTCTAGC GGCCTTCCTG TCCCGACTTA CATCCAGGTT 
TACCCTTCGC AACAGCCTCA ACAGTCCTTC CATCAACACG CAGGTCGACT 
GGATCAGCAG CCTTATCCTG TTTATTATGT CACTGCTCCT GTCCCACCTA 
GGCCCTACAG TATGCCTGTG CCACAATCTC CAAGTGTGAG CGATGCTGCA 
GGGTCTATCC CCTCTAACCA TCCCAACTCT ACCATGATGC CTCCACCTCC 
TAACAACCAC ATGAGAAGTG TTAGCAGTGG CAAACCTGAG ATGGGACAGG 
CTGGGGTTTA CACAACAGCC CCAGGTGTGG GCGGTGCTCA GATGGTTCAC 
CAGATTCCCA CAAACCAGCA GCAATTCATG GGGTATTCGC AGATCCGTCA 
CCCTCCTCAG TCTGGTTCAG CTGGGAATCC AAACTATGGA TATGAATATG 
TCGACAATGC TCATACACAG ATATACTACA CTCAACCTAT GGGACATGCA 
CAGTACCAGA CAATGACTGG GCCTCCACCT GCCATGGTGA TGCCTGATGG 
TTCTGCTGCT GCTAAGCTTC CAGCTGAGAA CATGACTCAA CAGATCCGGA 
GTTCACAGCC ATTGTGACAC ACACAAGGAA CACATGAAGA TGAACCACAA 
AATTTTGGAG GAAGAAAACC CCGGGTTGGT TTTTAAACGT ATAAATATAT 
AACTTTTACT TCTTTTTTCT TCTCTTCTTT TACAAGTTGC TGCATCAAAA 
AAAGAGTCTG GTGTCATGTT AAGTTTGGTA TTATGGGTTG TGTTTAAAAG 
TGTTGTGTGA GTAAATTAAA AAAACAAATA AATAGTGCTT CTTGGTGGGA 
TTTTACATTA TATAGTTGCA ATTGATACAT GTAGTGCTTT ACCAAAAAAA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT2G01190.1 [+] show detail - Octicosapeptide/Phox/Bem1p family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Octicosapeptide/Phox/Bem1p 2.6e-30
HMMPfam Octicosapeptide/Phox/Bem1p 1.5e-18

See the detailed result >

AT2G01190.1

Model type
Protein coding
Short Description
Octicosapeptide/Phox/Bem1p family protein
Computational Description
Octicosapeptide/Phox/Bem1p family protein; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270); BEST Arabidopsis thaliana protein match is: Octicosapeptide/Phox/Bem1p family protein (TAIR:AT3G18230.1); Has 5347 Blast hits to 4615 proteins in 344 species: Archae - 4; Bacteria - 100; Metazoa - 2308; Fungi - 1293; Plants - 931; Viruses - 29; Other Eukaryotes - 682 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-37-H18 introduced

  • F13028 - Specific phenotypes were NOT observed.
  • F23710 - Specific phenotypes were NOT observed.
  • F25920 - Specific phenotypes were NOT observed.
  • F30202 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

31 mutant lines found