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  3. RAFL09-37-N16

RAFL09-37-N16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06169)

full reading [+] show sequence

Nucleotide sequence: RAFL09-37-N16 - full reading 
AAGTACAACA ATCAACTCTA AGTCTATTAT ATTCAAGTCT TTGTTTTAAC 
CTAACAATGG CTTCAAATAA ACTTATTTCG ATTCTAGTTC TCGTAGTTAC 
ACTTTTACTC CAAGGTGATA ACAATTACGT CGTCGAAGCA CAACTCACGA 
CTAACTTCTA CTCAACCTCT TGCCCCAACC TCCTCTCCAC CGTCCAAACC 
GCCGTTAAAT CTGCCGTTAA CAGCGAGGCT CGAATGGGTG CATCTATCCT 
CCGTCTCTTC TTCCACGATT GCTTTGTCAA CGGATGCGAC GGTTCGATTC 
TACTAGACGA TACGTCAAGC TTCACAGGAG AACAAAACGC GGCTCCAAAC 
CGCAATTCAG CTCGTGGGTT TAATGTGATC GACAACATCA AATCAGCGGT 
TGAGAAAGCA TGTCCCGGGG TTGTGTCTTG TGCTGATATC TTAGCCATTG 
CTGCTAGAGA CTCCGTCGTA GCCCTTGGAG GACCGAACTG GAATGTGAAA 
GTAGGAAGAA GAGATGCAAG AACGGCGAGT CAAGCGGCAG CGAATAGTAA 
CATTCCGGCA CCGACTTCGA GTCTGAGCCA ACTCATTAGT AGTTTCAGTG 
CTGTTGGACT CTCCACCAGA GATATGGTTG CTCTCTCTGG CGCACACACG 
ATCGGACAAT CCCGTTGCAC GAACTTCCGA GCGAGAATCT ACAACGAGAC 
AAACATCAAT GCCGCCTTCG CCACGACACG TCAACGAACT TGCCCTAGAG 
CCTCCGGTTC CGGCGACGGA AACCTAGCTC CACTAGACGT CACCACGGCA 
GCTTCTTTCG ACAACAACTA CTTCAAGAAT CTCATGACTC AGAGAGGGCT 
CCTCCATTCC GACCAAGTGC TCTTCAACGG CGGCTCTACT GACTCCATCG 
TCCGTGGATA CAGCAACAAT CCGTCGAGCT TTAACTCTGA CTTCACGGCG 
GCGATGATAA AAATGGGTGA TATCAGCCCG TTGACTGGTA GTAGCGGTGA 
AATCCGCAAG GTTTGCGGGA GGACCAACTG ATTCAAGTCT ACTCCACGTG 
TCTTTTTCCT ATTGGATTTA CCTTTTATTA TTTGAGTTGG TGAGTATAAT 
AAAGATTGAT CTTCTCCAAA AAAATTCGAA GGTCCCTTTC AATGTTTTTT 
TTTTGTTTGC TTTGCTTTGT GTTGAAGTGT GTATTTCCGC ATTAAAAATC 
TAATGAAAAT TATTCCATTT GGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT5G05340.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Plant peroxidase 1.1e-67
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.5e-33
superfamily Haem peroxidase 1.6e-114
Gene3D no description 1.5e-63
PatternScan Peroxidases heam-ligand binding site 0
PatternScan Peroxidase, active site 0
ProfileScan Haem peroxidase, plant/fungal/bacterial 78.447
HMMPfam Haem peroxidase, plant/fungal/bacterial 2e-82

See the detailed result >

AT5G05340.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-37-N16 introduced

  • F08934 - rosette leaf::increased width / cauline leaf::increased width / stem::abnormal
  • F15146 - Specific phenotypes were NOT observed.
  • F28726 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found