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  3. RAFL09-38-D06

RAFL09-38-D06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06176)

full reading [+] show sequence

Nucleotide sequence: RAFL09-38-D06 - full reading 
ATCATCATCA TCATCTTCTT CAACCTTGTC TCGATCCAAA ATTTCATCTT 
TTACCAAAAC TATTACAATA TCCCTCACTC TACTTGTAAA GCTTCAATCT 
TCTTCACTTC TCAACAAACA GATAAACAAA AAGCTTCAAT CTTTGATACT 
TTCTCGATGG AACTTATCCC CAATCTTCCC GACGACGTTG CTCGCGAGTG 
TCTCCTTCGC TCCTCCTACC AACAGTTCCC TGTCATCGCC TCCGTTTGCA 
GAGCCTGGAA CCGTGAAGTC TCTCTCTCTC AGTTTTTACA TCAGCGAAAA 
GCTTCACGCC ATAGCCAAGA GCTTCTTATT CTGTCTCAGG CTCGTGTCGA 
CCCCGCTGGA TCCGGAAAGA TCATCGCTAC GCCTGAATAC CGGATCTCTG 
TTCTCGAATC CGGGTCGGGT CTTTGGACGG AGCTTCCTCC GATTCCTGGT 
CAAACCAAAG GACTTCCTCT GTTCTGCAGA TTGGTTTCCG TTGGATCCGA 
TCTTATTGTC TTGGGTGGGC TTGACCCGAT TACGTGGCAG GCCCATGATT 
CGGTATTCGT CTTCAGTTTT CTCACTTCCA AATGGCGCGT GGGGGCAACC 
ATGCCAGGTG TACGGAGGTC CTTCTTCGGA TGCGCTTCGG ATTCGGATCG 
GACGGTGCTG GTTGCGGGTG GACACAACGA AGAGAAATGT GCGCTTACGT 
CAGCTATGGT GTATGACGTG TCAGAAGACA AGTGGACGTT TTTGCCGGAT 
ATGGCGCGGG AACGAGACGA GTGCAAAGCG GTATTCCATG CTGGCAGATT 
CCACGTCATC GGTGGATATG CCACTGAGGA ACAGGGGCAG TTTAGTAAAA 
CAGCCGAATC GTTCGATGTG TCTACGTGGG AGTGGGGTCC ACTTACGGAG 
GACTTCCTCG ACGACACCGG CGATACCGTT AGCCCTCCGA CCTGCGTCGC 
CGGTGGGGAT TTGTACGCGT GCTGGGGTGG CGATGTGATG ATGTTTCTAA 
ATGACAAGTG GCAAAAGGTG GGCCAGATCC CTGCTGATGT GTACAATGTT 
ACTTACGTAG CGGTGAGGCC CGGGATGCTG ATTGTGATCG GCAACGGGAA 
GGCGTTGGCT GGATACGGTG AAGCCACCGT AGGGTATATA TGTGATTTAA 
GTAGCTCACG ATGGGTAAAA TTGGAAACAC ACGGTGGTCA TGTTCAAGCT 
GGCTGCTTCT TGGAGGTCTA ATGGAAAACC TATTCATCTT TGGAGTTTGA 
ACCTAAACCG CAACAAACCA ATGGGTAGTC TCGTGTGTCA ATCTACAAAT 
CTTTTCATGA ACAACAAAAT AAAGAAATAT TGTATTTATT CAGTGTCACT 
TTACCAAATA TTTATGTTCT CTATACAAAA CTTCAAAAGG AAGATTTGAA 
CTTTTAGGTT CTCTATACAA AACTGATCCA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT1G80440.1 [+] show detail - Galactose oxidase/kelch repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Kelch-type beta propeller 3.9e-34
HMMSmart Kelch repeat type 1 0.00082
HMMSmart Kelch repeat type 1 0.000095
superfamily Galactose oxidase/kelch, beta-propeller 3.4e-44
HMMPanther KELCH-RELATED 0.0000000000000047
HMMPanther Kelch related 0.0000000000000047
HMMPfam Kelch repeat type 1 0.00005
HMMPfam Kelch repeat type 1 0.00000032

See the detailed result >

AT1G80440.1

Model type
Protein coding
Short Description
Galactose oxidase/kelch repeat superfamily protein
Computational Description
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G15670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-38-D06 introduced

  • F05641 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found