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  3. RAFL09-38-G24

RAFL09-38-G24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08283)

full reading [+] show sequence

Nucleotide sequence: RAFL09-38-G24 - full reading 
AAAGAAAAAA AAAAGAAAGC TTTTTGGGAA CATAAACACC ATCGAAGGAG 
GGTGGGAGGT GTTTTATGTT CATGGGTGGA GCTTCTTGGC CAACCTGACC 
CCATTCATCA TATCATTACC CACTTTCTTC TCCTAAATTA TTCTCTCTTA 
TCTCTCTCTC TCTCTTTTTA TTTTCTTTCT TTCTTAATTC ATCTAAACTC 
TCTCTGCTTT TGCTTTTCGT AATTCCTTAC ATTTCACTCA ATATTAATCC 
CCAGAATCTC CGATCCACCC ACAAATTTAG CAATTTTCTG AGATTTGATC 
ATTTGGGTCA CCAAAAAATC TTGTCTTTTT GATCTGGGTT TAACGCCAAT 
AACATATGGG AAACATTAGC AGCAGCGGTG GTGAAGGTAG ACGCCGTCGA 
CGGCGAAACC ATACGGCGGC TCCACCACCA CCTCCTCCTC CTCCTTCTTC 
TTCTCTTCCT CCACCACCTC TACCTACAGA AATCCAAGCT AATCCCATCG 
TTTTCGCTGC CGTTACTCCC TATCCTAATC CTAATCCTAA TCCGGTTTAC 
CAGTACCCTG CTTCTTACTA CCACCATCCT CCCCCGGGAG CCATGCCTCT 
TCCGCCGTAC GACCACCACC TCCAACATCA TCCACCGCAT CCTTACCACA 
ACCACTCTTG GGCTCCCGTG GCGATGGCCA GATACCCTTA TGCTGGTCAC 
ATGATGGCTC AACCGACTCC TTACGTTGAA CACCAGAAAG CCGTCACGAT 
TCGTAACGAC GTTAATCTCA AGAAGGAGTC TCTTAGGCTT GAACCCGACC 
CGGATAATCC GGGTCGCTTT CTCGTCTCCT TTACGTTTGA TGCAACCGTC 
TCCGGAAGGA TTAGTGTCAT TTTCTTTGCT AAAGAATCCG AAGATTGCAA 
ACTCACAGCG ACAAAGGAAG ATATACTGCC ACCTATCACT CTAGATTTCG 
AGAAAGGACT TGGTCAGAAG TTTAAACAAT CATCTGGTTC TGGTATAGAC 
TTTTCGGTCT TTGAGGACGT TGAGCTGTTC AAAGCGGCCG CAGACACAGA 
GATCTATCCA TTAGCGGTTA AGGCAGAAGC AGCTCCCTCA GGTGGTGAGA 
ATGAAGAAGA AGAAAGGTCG GGGTCGAAGA ATGCGCAGAT TACTCAAGCG 
GTTTATGAGA AGGATAAAGG AGAGATTAAG ATTAGAGTGG TGAAGCAGAT 
ACTATGGGTT AATGGAACGA GATATGAGTT GCAGGAGATT TATGGGATTG 
GGAATACAGT TGAGGGGGAT GATGATTCAG CTGATGATGC TAATGATCCT 
GGTAAAGAAT GTGTTATATG TTTGTCTGAA CCACGAGACA CCACTGTTCT 
TCCATGTCGA CATATGTGTA TGTGTAGCGG ATGTGCTAAG GTATTGAGGT 
TTCAGACAAA TCGATGCCCC ATTTGCAGGC AACCTGTTGA AAGGCTTTTG 
GAGATAAAAG TTCACGGTAA CAACGGAAGC GGGAATAACA CCGGACAGGG 
AGAAACAGTT GAACAAGAGT AGCTAAACAC GGCCGAGTAT GGATTGAAAT 
GCCATCGAAA TATTAGTAGT ATATGCATGT TTGATCCTTG TATGTTAACA 
ACAAAATGTG TGATTGTCAA TTCATAATAT AGAGATTACC AAAAAAAAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT3G09770.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther MAHOGUNIN 1.1e-138
ProfileScan Zinc finger, RING-type 11.162
superfamily RING/U-box 1.6e-14
HMMSmart Zinc finger, RING-type 0.00026
Gene3D no description 3e-05

See the detailed result >

AT3G09770.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G03200.1); Has 9681 Blast hits to 6810 proteins in 512 species: Archae - 8; Bacteria - 442; Metazoa - 3215; Fungi - 970; Plants - 3369; Viruses - 475; Other Eukaryotes - 1202 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-38-G24 introduced

  • F14611 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found