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  3. RAFL09-38-J03

RAFL09-38-J03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08285)

full reading [+] show sequence

Nucleotide sequence: RAFL09-38-J03 - full reading 
GACAGTTCTT CTTCCTCAGC TAAACCATAT CCACAAGCTA CCAGTAGTAC 
TAAACCGACG CCTCCGACAA TCATACAGAT TACCAGTGAT CTCCGCCGTT 
TCCGGTAAAG AGCTGATACT TTCCGGCAAG GTACGGGCGG TGGAGCCCAA 
AGAAGCCAAT GCGGTTGTGG CGTCGGAGGG ATATATACTG TTAGACGTGA 
GGCCGGCTTG GGAAAGAGAA AAGGCACGCG TGAAAGGTTC CTTACACGTG 
CCACTGTTCG TGGAAGATCC AGACAATGGG CCGATCACGT TGCTGAAGAA 
ATGGATTCAT TTGGGATATA TTGGGCTTTG GACGGGCCAG AGATTCACCA 
TGATCAATGA CGAATTCGCC CTCCGTGTTG TGGAGGCTGT CCCGGACAAA 
GAGAGTAAAG TGCTCGTCGT GTGCGGTGAA GGACTCAGGT CGTTGGCGGC 
TGTATCAAAG CTCCACGGAG AAGGGTACAA AAGCTTAGGG TGGTTAACCG 
GAGGGTTTAA CCGAGTATCC GAGGGAGATT TTCCAGAGAT CGAAGGGACC 
GAAGAGCTTC GGTTCGCCAC GATAGGAGGT GTATCATTTT ATTTACTCAA 
ACTACTTGTA CTGTTACCGT CTTTTGGCCA GAAGAGTCGT TAAATTGGTT 
TTTTGGAGCC AAGTGTGAAG ACATTTTTTG TTTTTAAAAT TGTGTCCGGT 
TTACACAATT GGTCACTGGT TTATCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT3G08920.1 [+] show detail - Rhodanese/Cell cycle control phosphatase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Rhodanese-like 2.1e-05
HMMSmart Rhodanese-like 6.69999687625999e-13
ProfileScan Rhodanese-like 0
Gene3D Rhodanese-like 1.59999889349247e-13
superfamily Rhodanese-like 5.3e-17

See the detailed result >

AT3G08920.1

Model type
Protein coding
Short Description
Rhodanese/Cell cycle control phosphatase superfamily protein
Computational Description
Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G42220.1); Has 237 Blast hits to 237 proteins in 53 species: Archae - 0; Bacteria - 52; Metazoa - 3; Fungi - 0; Plants - 146; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-38-J03 introduced

  • F14531 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found