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  3. RAFL09-38-K03

RAFL09-38-K03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17710)

full reading [+] show sequence

Nucleotide sequence: RAFL09-38-K03 - full reading 
GATAATTGAA ACAAACAAAG AAAAAAGTGG ATTCTCAAAA TTGAATGAAG 
CAACGAACGA TTCAACATCA AATCTAGCTG AATTATTGTT TCGCGTTGAT 
TGATTGATCC GGAGAAAGGC GATGACATCG CCTGGATCGA AGAAAGTTGT 
TACCACCGAC GACGGATCGG AGAAGAAAGT TTCCGGCAAT CTCGGAAAAG 
TAAGTTTTTC CGGAGATCTT AATCATAGTG GAAGCCATAG TGGAAGCCAT 
AGTCGTAGCA GCAGCAGCGC CGGAGGTGGT GAAGGAGGAA CGTTTGAGTA 
TTTCGGATGG GTTTATCATT TGGGTGTGAA TAAGATCGGT CATGAGTACT 
GTAATCTTCG TTTCCTTTTC ATTAGAGGCA AATATGTTGA GATGTATAAA 
AGAGATCCTC ATGAGAACCC AGACATTAAA CCTATAAGGC GTGGTGTCAT 
AGGGCCGACA ATGGTGATTG AAGAGCTAGG ACGTCGAAAA GTTAATCATG 
GGGATGTCTA CGTTATAAGG TTCTATAACC GGTTGGACGA GTCAAGGAAA 
GGAGAAATTG CTTGTGCTAC TGCTGGAGAA GCCCTGAAAT GGGTTGAGGC 
TTTTGAGGAA GCAAAGCAGC AGGCTGAATA TGCACTATCG AGAGGCGGAA 
GTACAAGAAC AAAGTTAAGC ATGGAGGCCA ACATCGATCT GGAAGGACAT 
CGGCCTAGAG TACGGCGTTA TGCTTATGGA TTAAAAAAGC TTATCCGAAT 
TGGGCAAGGT CCAGAGTCTC TTTTGAGGCA ATCATCTACC CTGGTTAATG 
ATGTCAGGGG TGATGGTTTC TATGAGGGTG GTGACAATGG AGATGCAATC 
GAGGCACACG AATGGAAATG TGTTCGTACA ATCAATGGTG TTAGGATTTT 
TGAAGATGTT GCTAACTTCA AGGCTGGTCG AGGAGTTCTT GTGAAAGCCG 
TTGCTGTAGT TGAAGCAAGT GCGGATACCG TGTTCGAAGT ACTTTTGAAC 
ATTGACAAAC ATCAAAGATA CGAGTGGGAT GCAGTAACAG GTGATTCGGA 
AAAGATAGAC TCATACGAGG GTCACTATGA TGTCATTTAT TGCATATACG 
ATCCTAAATA TCTTTCGCGA TGGCAGTCAA AGAGAGATTT TGTGTTCTCT 
AGACAGTGGG TTCGTGGGCA AGATGGGACA TATACAATCT TACAGTTTCC 
AGCAGTGCAT AAGAAACGGC CTGCAAAGTC TGGATATCGA CGTACAGAAA 
TCACGCCATC AACTTGGGAA ATCAAAAGCT TAAAAAAGCG CAGCGATGCA 
GAAACTCCAA GTTGTCTTGT AACACACATG CTAGAAATCC ACTCTAAACG 
TTGGTGCAAA TGGAAGAGGA CCAGCTACTC AAAGTTTGAA AAGACTATTC 
CATATGCATT ACTCCTCCAA GTAGCAGGTC TGAAGGAGTA CATTGGAGCA 
AACCCAGCCT TCAAGTATGA AACTTCCGCC ACGGTTGTCC AGTCCAAGTT 
CCAAGATGTC CCCAATGGTG AATATGTAGA TGAAGAAATG GAGGAGCAGT 
TTTATGATGC CACGGACTCA TCATCTGGAG AAGAGGATGA GGAGGAAAGC 
GATGACGATG ATGAAAATCA GGACAATAAG GAGATAAAAG TTAAACTGAA 
GAATGTTTCA TGGGCAATCG CTAGCTTATC TTTGAAGCGA CCTAAAGCTC 
CAGGCGCAAG TAATGTATTA GACGCTAGTG TTGATCCTGT GAGTATCGAT 
CCAAGTCAGT TCCAAGGATC TCTGCGCAAA GGAAATGGTG ATAAGGACTC 
AAATTGCTGG AATTCTCCTA GTGGCATGGG GTTTATGATC AGGGGAAAGA 
CCTACCTAAA AGATAATGCA AAGGTGATGG GTGGGCAGCC CCTTCTAACA 
CTTATATCAG TGGATTGGTT CAAAGTTGAT AGTGCTGTAG ACAACATCGC 
CCTGCATCCA AAATGTCTTA TCCAGTCGGA ACCTGGGAAA AAGCTCCCAT 
TCATCCTAGT CATCAATCTA CAGGTACCAG CAAAGCCTAA CTATTGTCTG 
GTACTCTACT ATGCTGCGGA TCGACCTGTA AACAAGACTT CATCCCTGGG 
AAAATTCGTG GATGGGAGTG ACAGTTACCG CGACGCAAGA TTTAAGCTAA 
TTCCAAGTAT TGTTCAGGGA TATTGGATGG TCAAGCGGGC TGTTGGAACA 
AAAGCCTGCT TGCTCGGTAA AGCTGTGACC TGTAAGTACC TGAGGCAGGA 
TAACTTTTTG GAGATTGATG TAGATATTGG ATCATCGGCT GTTGCGAGGA 
GCGTTATTGG TCTGGTCCTT GGTTATGTCA CAAGCCTCAT TGTTGATCTC 
GCCATCTTGA TTGAGGGAAA GGAGGAAAGC GATTTGCCCG AGTATATCCT 
TGGGACAGTT CGACTTAACC GAATAGAGCT GGACTCAGCC GTATCATTTG 
AGGAATGAGA CCATCCAGTG CCGACTATAA CATGTGACAT ATGTCTTATG 
GATTGCGACC CTTTGGCCAA AACAAAAATA ACATATGAAT AATGAAAGAT 
TGAACCGTAC AATTTTTCTT CTTTTCTTTC AGAGATTGTA AGCTCAGACG 
AGTGAAGAGG TTTAGTTTTT TCAAGGTGGA ATGGTTTATA AGTTAATGAA 
CTTTGAAGTC GTTACTGATA AAAGATTTGA CTTTTTGCTC AAAAAAAAAA

Gene models with high sequence identity

  1. AT5G35180.1 [+] show detail - Protein of unknown function (DUF1336)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Lipid-binding START 18.845
Gene3D no description 3.3e-11
superfamily Bet v1-like 8.9e-19
HMMPfam Protein of unknown function DUF1336 1e-75
HMMPfam Lipid-binding START 8.6e-08

See the detailed result >

AT5G35180.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1336)
Computational Description
FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: ENHANCED DISEASE RESISTANCE 2 (TAIR:AT4G19040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-38-K03 introduced

  • F05810 - seed::increased size
  • F17304 - Specific phenotypes were NOT observed.
  • F20011 - Specific phenotypes were NOT observed.
  • F20604 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found