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  3. RAFL09-38-M21

RAFL09-38-M21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06195)

full reading [+] show sequence

Nucleotide sequence: RAFL09-38-M21 - full reading 
ATGAGAGATA GACAGAGAGG GAAAACAACT ACACAAGTCA AAATTTCTGT 
TCTAAAAAAG TAAAAGAAGT ATGGTGGAGG AAACGAGCTC TGGTGGTGGC 
TCATCGGCTT CTCCGATCAA AACCATCGTC GTTTTGGTTC AGGAGAACAG 
GTCGTTCGAT CACATGTTAG GTTGGTTCAA GGAGCTTAAC CCAGAAATCG 
ATGGAGTATC CGAATCCGAA CCAAGATCCA ACCCACTTTC TACATCTGAC 
CCGAACTCTG CTCAAATCTT CTTCGGCAAA GAATCTCAGA ACATTGATCC 
TGATCCCGGT CACTCTTTTC AGGCGATCTA CGAACAAGTG TTTGGAAAAC 
CATTCAGCGA CGAGAGTCCG TACCCGGATC CGAAGATGAA CGGGTTCGTA 
CAAAACGCAG AGGCGATAAC AAAAGGGATG TCGGAGAAAG TAGTGATGCA 
AGGTTTTCCG CCGGAGAAAC TTCCGGTATT CAAGGAACTA GTTCAAGAAT 
TCGCTGTCTG CGATCGGTGG TTCTCGTCGT TGCCCTCGTC CACGCAGCCT 
AACCGACTCT ACGTCCACGC GGCGACATCA AACGGTGCGT TTAGTAATGA 
CACTAACACG CTTGTTCGTG GCTTTCCTCA GAGGACAGTG TTCGAATCAC 
TTGAAGAGAG CGGTTTCACA TTTGGAATTT ATTACCAATC CTTTCCTAAT 
TGCCTCTTTT ACAGGAACAT GAGGAAACTG AAGTACGTGG ACAACTTCCA 
TCAATACCAC TTAAGCTTCA AGAGGCATTG CAAAGAAGGG AAGCTTCCAA 
ACTATGTGGT TATAGAACCA AGGTACTTCA AGATTTTGTC GGCTCCAGCT 
AATGATGACC ATCCCAAAAA CGACGTCGTT GAAGGCCAAA ATCTAGTCAA 
AGAAATCTAC GAAGCCTTAA GAGCTAGTCC TCAGTGGAAC GAGATTCTCT 
TCGTTGTTGT TTATGATGAA CATGGTGGTT ATTATGACCA CGTCCCTACT 
CCAGTCATTG GTGTCCCAAA TCCTGATGGT CTAGTTGGAC CTGAGCCCTA 
TAACTTTAAG TTTGACCGGC TTGGTGTTAG GGTTCCTGCT TTGCTAATCT 
CGCCTTGGAT CGAACCTGGA ACGGTGTTAC ACGAGCCAAA TGGACCAGAG 
CCAACGTCGC AGTTCGAACA TTCATCAATT CCGGCAACAC TGAAGAAAAT 
ATTCAACCTC AAGAGCTTTC TTACAAAGCG TGACGAATGG GCTGGAACAC 
TCGATGCTGT CATCAACCGG ACCAGCCCAA GGACGGACTG CCCCGTCACA 
TTACCGGGAC TTCCTAGGGC AAGAGACATA GACATTGGAA CACAAGAAGA 
AGACGAAGAT CTCACTGATT TTCAAATCGA ACTGATTCAA GCAGCGGCTG 
TACTAAAAGG AGATCATATC AAAGACATTT ACCCGTTTAA GCTCGCAGAT 
AAAATGAAGG TTTTGGATGC GGCTAGGTAC GTAGAAGAAG CTTTCACTAG 
ATTCCATGGT GAGTCCAAGA AGGCTAAAGA AGAAGGCCGT GATGAGCATG 
AGATCGTTGA TCTTTCTAAA GGATCTACTC GTCACTCGAC TCCTAAGTCT 
TTTGTTCAGA AGTTATTCTC GTGTTTGATT TGTGATAATT GATCTTGAGT 
TGAAACAGAT TTGATCTCTG TGAGATTTGG TGTATTTCTC GGATTTTATG 
TGAAGAGCGT TTGAAATTTG ATATTTGTTT GTTTTCCAAA AAAAAAAAAA 
AAA

Gene models with high sequence identity

  1. AT3G03520.1 [+] show detail - non-specific phospholipase C3
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

See the detailed result >

AT3G03520.1

Model type
Protein coding
Short Description
non-specific phospholipase C3
Curator Summary
Lysophosphatidic acid phosphatase highly expressed during phosphate starvation and abiotic stresses. Role in lipid synthesis.
Computational Description
non-specific phospholipase C3 (NPC3); FUNCTIONS IN: hydrolase activity, acting on ester bonds, Lysophosphatidic acid phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, phosphate metabolic process, response to abiotic stimulus; LOCATED IN: vacuole, membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C4 (TAIR:AT3G03530.1); Has 2235 Blast hits to 2112 proteins in 404 species: Archae - 32; Bacteria - 1866; Metazoa - 0; Fungi - 127; Plants - 159; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-38-M21 introduced

  • F02305 - seed::increased size / seed::increased length
  • F06737 - Specific phenotypes were NOT observed.
  • F25646 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found