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RAFL09-39-B02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06203)

full reading [+] show sequence

Nucleotide sequence: RAFL09-39-B02 - full reading 
AAGCTTTATC TCTTTCTTTC TCTCCTCTCT ATCTTTCTCT CACACTCATG 
GGTCTTCCAA CAGATTTCAA AGAGCTTCAG ATTCCAGGTT ACGTACTAAA 
AACACTTTAC GTCATCGGTT TCTTTAGAGA CATGGTCGAT GCTCTTTGTC 
CTTACATCGG TCTACCAAGT TTTCTTGACC ACAACGAGAC CTCTCGATCC 
GACCCGACCC GACTCGCTCT CTCCACGTCA GCAACTCTTG CCAACGAGTT 
AATCCCGGTG GTTCGTTTCT CCGATCTTTT AACCGATCCG GAAGATTGCT 
GCACGGTTTG CTTATCCGAT TTTGTATCCG ACGATAAGAT TAGACAGCTG 
CCGAAGTGTG GACACGTGTT TCATCATCGT TGTTTAGACC GTTGGATCGT 
TGACTGTAAT AAGATAACGT GCCCGATTTG TCGGAACCGG TTCTTACCGG 
AGGAAAAGTC CACGCCGTTT GATTGGGGTA CTTCAGATTG GTTTAGAGAT 
GAAGTGGAGA GTACCAACTA ATAATGATGG TTTTACTTTT ACTTTTTACT 
TTTTTCACGG TAATATTTTT CTACTGTATA ATTCTTTCTT CCAAACTACT 
GTATAATTCA AGTATAAGAT TATGTAATTG TGTATATTAG CATCAATCAT 
CTTTCTTTGT TAAAGAACCG TCTGTATAAA ATCTTCCAAT GTAATCTGCT 
TTTCTTTTAT TTGAATAAAA AAGTGGACAA ATAAACAAAA AAAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT4G11360.1 [+] show detail - RING-H2 finger A1B
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Zinc finger, RING-type 13.124
HMMSmart Zinc finger, RING-type 2.6e-06
HMMPfam Zinc finger, C3HC4 RING-type 1.4e-06
superfamily RING/U-box 8.5e-16
Gene3D no description 7.4e-11
HMMPanther gb def: Hypothetical protein At2g28920 6.3e-15
HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 6.3e-15

See the detailed result >

AT4G11360.1

Model type
Protein coding
Short Description
RING-H2 finger A1B
Curator Summary
Encodes a putative RING-H2 finger protein RHA1b.
Computational Description
RING-H2 finger A1B (RHA1B); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to cadmium ion, response to chitin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger A1A (TAIR:AT4G11370.1); Has 7546 Blast hits to 7528 proteins in 261 species: Archae - 0; Bacteria - 0; Metazoa - 1890; Fungi - 589; Plants - 4122; Viruses - 19; Other Eukaryotes - 926 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-39-B02 introduced

  • F29839 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found