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  3. RAFL09-39-I17

RAFL09-39-I17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17714)

full reading [+] show sequence

Nucleotide sequence: RAFL09-39-I17 - full reading 
GAAAAATAAA ATTTATTTTT CTCTCTCGCT TGGTTCAACC GTGGTTGTTC 
ATCGGAAAAA TATCTTCGGC TTCAATTTCG TTCGATTTAC CCTAAATTCT 
CGACTAGTGT TCGTCAATCC CACTTCCAAT TCCACATTTC AAACCTTTTC 
AGGAAGTTGA AATCAAAAGC ATGAATGCTT AAACAGTTTA CGCATTATTG 
CGAAATGCAA GCCGAGCTGA TACCCGAAGG TCCTAACGGT GAGGGCCGTT 
TATCAAACCA GAACAGCAAC CCTAATTTAC TCTCTTCTGC TTCTATCAGT 
ATTACTCAGT TTCCTGCTAA GAAGCCGACT AGGCAATGGG CTGCTTGGAC 
ACATCAAGAA GAGGAAAGTT TCTTCACTGC TCTTCGTCAA GTTGGAAAGA 
ATTTTGAGAA GATAACTTCT CGTGTTCAGA GCAAAAACAA GGACCAGGTC 
AGGCATTACT ATTATCGTTT AGTGAGGCGT ATGAACAAAC TTTTGGGCCC 
GGATCTGAGC CTTGATGCCA AGAACCCAAA GGACACCAAT GCTGCAATGC 
TACGATGGTG GTCTTTGCTT GAAAAGTATA GCTGCAAAGC TTCAAAACTT 
CATCTCAAGC CCCGGAGATT CAAACTATTT ATAGAGGCCT TGGAACACCA 
ATTGCTGAAA GACCGCAGAA AGAGCATAAG AAAACGGACT TGCCAGGGAG 
AAAATCTCTC TTCTGCTTCC CTCGGAAACA TCTCAAGTCA TAGTAGAGAA 
AGAGGATTGG ATAACCGTCC ATTTAAACTT ATTCTCTCCG ACGGCCAAAA 
TGTTAAAAAG CTAGGGCCTG GAAGAGCATC TACCAAACAT GGTGAAAGCT 
TAAGTGTCAA CCTTGGTGAC GAAAAAGAAG ACACAGCCTT TGGGAGAGGT 
GGAAGGCAAC GGCGAAAACA AGGTTATAGA AAATGGGAAA AAGCTGCAAT 
AGATGGGGTC TCTCTGGTTG CTGATGCTGC AGAGCATTTG GAACGAACAT 
CAATTGACAA AGATATGGAT GATCAAACAG ATTTAGGTCC CACAAGATAT 
TTAACCGGAA AGTCTCCACT TTCTCTATGC TCAGCTGGTG ATGTTCCTCT 
CAGTGATGCC AATATGCAGT TTTCTGCCAA GCTTAAACTT CAGCTGTTCC 
CGATTGATGA ATGTACTCGA AGATCCTTGG AAATGGATAA GCACAATCCG 
CATCTTGAAC TTACTCTTAG TAATCGCAAG AAGATATCAT CTGTACTTGA 
ACATCTCAAT CGCAAATGGG GAAGCTCAAG TTGTGCGACT GGAGAGCTAT 
TGCTATTTCC TTACAACGCA CGAAAAGAAA CTGTAACGTG CCATCAGAGG 
TGGACCCATG ACTCTTTTCT AAGCGCAGCA GAAGTGCATT CAATGGTCGG 
AAGTCCTTCG GTTTTCCGCT TAAGGTATGG TTGGTTTGTC CATGATGCGT 
CAGGTTCTAT TATTTCTCAA GTTCCAACTT CAGATCCTTG CCCTTCACTC 
GAGGATGACA TGAATGTGGA TAGGTTGAAC GAGGTCAACA TGCTCCTTAC 
TGAATCAGGA CCCTTGTCTG TGCATTCAAC TGCTGAACAA ACGACATCTG 
TAGAGCCCAG TCAGGGTCTA GTATGTGCAT CTGGTGTCCA TGATCGTCCC 
GCAAGATCTA GAGATGATTA TGAACCTGCT TCAACGAGTA TTACTCCACT 
TGAGCATTTG AGCGGCGGTA ATGCACAATC ACCAGGAGAA TGGGCTGATA 
GTCTTACTAA CATAAGTATA GGTGATCTAC TTTCTGAAGT GCCCGATGAC 
ATAGATAGTG ATGGTGTTGA TCCACCTGCC ACCGAAGGTT CACATTACCT 
CCTTCGAGAT GTCCCATTTA CCTCTGACTC TTTTGATGCT GCAATTGCTG 
CTCATATACT AAGACACCAG AACAAGCCAA GTGCTCAACT ACCGCTGACT 
TCTGGCTCTT CCTCTCTGTG GGATGATGAA GAAACACGTG ATGCCTTCTC 
TTTCCAAAAA AAATCGTTTC GCAAATTCCA CCGAGCTGGC TAGTGTTGCT 
TCTCCTAAAG GTGTTGGCAG AGTAAATGGA GAGCCTTCAC AGTTGGTGGA 
GGCTTCATCC GGCGATGAGG GATCTTATAA CCCTCATGAC GATGGAGATC 
CAATGGAAGA GGGTCCAGCA GACCCTCATA CGATGGATTC TCCAGGGAAG 
ACCCCTTGTG GACTTGCGGA TGTATACTGG CCCGACTCGT TAGGACCACT 
GGATTTAGAC ATTAGATCGT CAAAGTATAC AGATGATTTG ATCCTTAGTG 
AGAGCCTCGG GGGATTGAGC CGTCTGATAG CAACCAGCCT TGATGCGTTT 
CAGAACTGCT CGCTCTTTGG GTTCGACAAT AAGAAGGACA AGTCTAACAT 
GGTATGAAAT GGAACCAAAG CTAAAGCATG GGGTCCAAAT GTTGATAGTT 
GAAAAAGAAA GTGACTTCTT GCCTTTTGAA AAAAGAAACT TTTATCACCA 
ACTGATAGCT TCACTGTACA AAAATTTGAT GTAACCTTTT ACTCTTCCTT 
TCACACATTC TTTTGTGTTG ATACATGTTT CTCTGTGTAC ACTTTTACTG 
TTAATTTACA TGTTTATTTG GTTAAAAAAA AAA

Gene models with high sequence identity

  1. AT2G36960.1 [+] show detail - TSL-kinase interacting protein 1
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMSmart SANT, DNA-binding 5.1e-06
HMMPfam Myb, DNA-binding 9.5e-06
ProfileScan SANT, eukarya 13.52
superfamily Homeodomain-like 4.3e-09

See the detailed result >

AT2G36960.1

Model type
Protein coding
Short Description
TSL-kinase interacting protein 1
Curator Summary
Arabidopsis thaliana myb/SANT domain protein
Computational Description
TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1); Has 171 Blast hits to 167 proteins in 60 species: Archae - 0; Bacteria - 20; Metazoa - 45; Fungi - 2; Plants - 87; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-39-I17 introduced

  • F00728 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found