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  3. RAFL09-39-M04

RAFL09-39-M04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06219)

full reading [+] show sequence

Nucleotide sequence: RAFL09-39-M04 - full reading
AGCTCTCAAA CAAAGATATT GCTACTGCCT CACCAAATTT TCCTCCGGAA 
AGAGAGTGAG AAAATTTCCA AGAGAAAGAG GAGAGAGAAT GGCTGGAGAA
GAAATAGAGA GGGAGAAGAA ATCTGCAGCA TCTGCAAGAA CTCACACCAG
AAACAACACT CAACAAAGTT CTTCTTCTGG TTATCTGAAA ACGCTTCTCC
TGGTAACGTT CGTCGGAGTT TTAGCATGGG TTTATCAAAC AATCCAACCA
CCACCCGCCA AAATCGTCGG CTCTCCCGGT GGACCCACCG TGACATCACC
GAGGATCAAA CTGAGAGACG GAAGACATCT GGCTTACACA GAATTCGGAA
TCCCTAGAGA CGAAGCCAAG TTCAAGATCA TAAACATCCA CGGCTTCGAT
TCTTGTATGC GAGACTCGCA TTTCGCCAAT TTCTTATCGC CGGCTCTTGT
GGAGGAATTG AGGATATACA TTGTGTCTTT TGATCGTCCT GGTTATGGAG
AGAGTGATCC TAACCTGAAT GGGTCACCAA GAAGCATAGC ATTGGATATA
GAAGAGCTTG CTGATGGGTT AGGACTAGGA CCTCAGTTCT ATCTCTTTGG
TTACTCCATG GGTGGTGAAA TTACATGGGC ATGCCTTAAC TACATTCCTC
ACAGGTTAGC AGGAGCTGCC CTTGTAGCTC CAGCGATTAA CTATTGGTGG
AGAAACTTAC CGGGAGATTT AACAAGAGAA GCTTTCTCTC TTATGCATCC
TGCAGATCAA TGGTCACTTC GAGTAGCTCA TTATGCTCCT TGGCTTACAT
ATTGGTGGAA CACTCAGAAA TGGTTCCCAA TCTCCAATGT GATTGCCGGT
AATCCCATTA TTTTCTCACG TCAGGACATG GAGATCTTGT CGAAGCTCGG
ATTCGTCAAT CCAAATCGGG CATACATAAG ACAACAAGGT GAATATGTAA
GCTTACACCG AGATTTGAAT GTCGCATTTT CAAGCTGGGA GTTTGATCCG
TTAGACCTTC AAGATCCGTT CCCGAACAAC AATGGCTCAG TTCACGTATG
GAATGGCGAT GAGGATAAGT TTGTGCCAGT AAAGCTTCAA CGGTATGTCG
CGTCAAAGCT GCCATGGATT CGTTACCATG AAATATCTGG ATCAGGACAT
TTTGTACCAT TTGTGGAAGG TATGACTGAT AAGATCATCA AGTCACTTTT
GGTTGGGGAA GAAGATGTAA GTGAGAGTAG AGAAGCCTCT GTTTAAGTCA
ATGTGGTTTT TAAGAATAAT TAATTGCTTG CAATGCTAAA CTAGTTATGA
TCAACAATCA AATCAAAGCA ACTTTAGTCG AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G48410.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily alpha/beta-Hydrolases 1.2e-38
HMMPanther ALPHA/BETA HYDROLASE RELATED 0.00000022
HMMPfam Alpha/beta hydrolase fold-1 0.00000000000022
Gene3D no description 8.2e-26

See the detailed result >

AT3G48410.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G36290.1); Has 1039 Blast hits to 1035 proteins in 267 species: Archae - 10; Bacteria - 561; Metazoa - 10; Fungi - 51; Plants - 319; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-39-M04 introduced

  • F00119 - Specific phenotypes were NOT observed.
  • F00501 - seed::decreased size / seed::decreased length
  • F01238 - seed::increased size

Mutant lines with disrupted or induced

11 mutant lines found