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  3. RAFL09-39-M04

RAFL09-39-M04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06219)

full reading [+] show sequence

Nucleotide sequence: RAFL09-39-M04 - full reading 
AGCTCTCAAA CAAAGATATT GCTACTGCCT CACCAAATTT TCCTCCGGAA 
AGAGAGTGAG AAAATTTCCA AGAGAAAGAG GAGAGAGAAT GGCTGGAGAA 
GAAATAGAGA GGGAGAAGAA ATCTGCAGCA TCTGCAAGAA CTCACACCAG 
AAACAACACT CAACAAAGTT CTTCTTCTGG TTATCTGAAA ACGCTTCTCC 
TGGTAACGTT CGTCGGAGTT TTAGCATGGG TTTATCAAAC AATCCAACCA 
CCACCCGCCA AAATCGTCGG CTCTCCCGGT GGACCCACCG TGACATCACC 
GAGGATCAAA CTGAGAGACG GAAGACATCT GGCTTACACA GAATTCGGAA 
TCCCTAGAGA CGAAGCCAAG TTCAAGATCA TAAACATCCA CGGCTTCGAT 
TCTTGTATGC GAGACTCGCA TTTCGCCAAT TTCTTATCGC CGGCTCTTGT 
GGAGGAATTG AGGATATACA TTGTGTCTTT TGATCGTCCT GGTTATGGAG 
AGAGTGATCC TAACCTGAAT GGGTCACCAA GAAGCATAGC ATTGGATATA 
GAAGAGCTTG CTGATGGGTT AGGACTAGGA CCTCAGTTCT ATCTCTTTGG 
TTACTCCATG GGTGGTGAAA TTACATGGGC ATGCCTTAAC TACATTCCTC 
ACAGGTTAGC AGGAGCTGCC CTTGTAGCTC CAGCGATTAA CTATTGGTGG 
AGAAACTTAC CGGGAGATTT AACAAGAGAA GCTTTCTCTC TTATGCATCC 
TGCAGATCAA TGGTCACTTC GAGTAGCTCA TTATGCTCCT TGGCTTACAT 
ATTGGTGGAA CACTCAGAAA TGGTTCCCAA TCTCCAATGT GATTGCCGGT 
AATCCCATTA TTTTCTCACG TCAGGACATG GAGATCTTGT CGAAGCTCGG 
ATTCGTCAAT CCAAATCGGG CATACATAAG ACAACAAGGT GAATATGTAA 
GCTTACACCG AGATTTGAAT GTCGCATTTT CAAGCTGGGA GTTTGATCCG 
TTAGACCTTC AAGATCCGTT CCCGAACAAC AATGGCTCAG TTCACGTATG 
GAATGGCGAT GAGGATAAGT TTGTGCCAGT AAAGCTTCAA CGGTATGTCG 
CGTCAAAGCT GCCATGGATT CGTTACCATG AAATATCTGG ATCAGGACAT 
TTTGTACCAT TTGTGGAAGG TATGACTGAT AAGATCATCA AGTCACTTTT 
GGTTGGGGAA GAAGATGTAA GTGAGAGTAG AGAAGCCTCT GTTTAAGTCA 
ATGTGGTTTT TAAGAATAAT TAATTGCTTG CAATGCTAAA CTAGTTATGA 
TCAACAATCA AATCAAAGCA ACTTTAGTCG AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G48410.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily alpha/beta-Hydrolases 1.2e-38
HMMPanther ALPHA/BETA HYDROLASE RELATED 2.2e-07
HMMPfam Alpha/beta hydrolase fold-1 2.2e-13
Gene3D no description 8.2e-26

See the detailed result >

AT3G48410.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G36290.1); Has 1039 Blast hits to 1035 proteins in 267 species: Archae - 10; Bacteria - 561; Metazoa - 10; Fungi - 51; Plants - 319; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-39-M04 introduced

  • F00119 - Specific phenotypes were NOT observed.
  • F00501 - seed::decreased size / seed::decreased length
  • F01238 - seed::increased size

Mutant lines with disrupted or induced

11 mutant lines found