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RAFL09-39-M09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08304)

full reading [+] show sequence

Nucleotide sequence: RAFL09-39-M09 - full reading 
ATGATTCCAT TTCTGCAGGA AGGTTTATTT TGCCAGAACC GGGTGGTTAG 
CAATCGCGCT ATTACCAACC CCCTTCGCAC TTTTCTTGCT TGCATCATCA 
GGAACTGCAT CAGCATTACA AGCTGGAACA GCGCTGATGG GTTTAAGCTC 
CGGGTTTATC TTTGCAGCAG CGGTTTCCAT CACATCAGAG CTTTTTGGAC 
CAAACAGTGT TGGAGTTAAC CACAATATCT TAATCACAAA CATACCGATA 
GGATCATTGA TCTATGGATT CTTGGCTGCA TTGGTCTATG ACTCACATGG 
TTTCACCGGG ACCAAATCAA TGACCTCGGA GTCGGTGGTG TGTATGGGAC 
GAGATTGTTA TTACTTGACC TTTGTGTGGT GGGGTTGCTT GTCTCTTCTT 
GGGCTAGGTT CGAGTCTTGT GTTGTTTATT AGAACTAGAC GAGCTTATCA 
ACGGTTTGAA CAAGCTCGTA TAAGTTCGAA CATCAACGAC TCTTAGAAAT 
TTGCATCAAC CCCAACGGTT TGTGTGTATA TGTAGGATCT AAATTATAAC 
AGACGGATTA ATGGTATTTT AGTGGATTTT GGCTGAGGTT GATTAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT4G19450.1 [+] show detail - Major facilitator superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther UNCHARACTERIZED NODULIN-LIKE PROTEIN 4.9e-58
superfamily Major facilitator superfamily, general substrate transporter 2.9e-08

See the detailed result >

AT4G19450.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G45275.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-39-M09 introduced

  • F12704 - Specific phenotypes were NOT observed.
  • F20838 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found