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  3. RAFL09-40-G10

RAFL09-40-G10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06232)

full reading [+] show sequence

Nucleotide sequence: RAFL09-40-G10 - full reading 
CTCAATCTCT CTCAGGTTTC TCTCTCCTCT CTCCAGGAGG TCAAAAAATT 
CTTTAAAGAG CCGTTTAGAC CAAACCCATT TTTATAATCA TCAATGGACG 
ATGATGGATT TCGCAATTGG GGATACTATG AACCAGCGGC TGCTTCTTCG 
TTTAAAGGTA ATCTCGGTTT GCAGCTTATG TCTACTATTG ACCGGAACAC 
TAAACCGTTT TTACCCGGTC GTGAATCGAA TCTTATGATC GGTTCTAACG 
GTTCGTATCA CTCTCGAGAG CAAGACATGA ACTATAGCTG GATTAATCAA 
CCAAAGGACA ACAAGTTCTT CAACATGTTG CCTATAAGTA CACCGAGTTA 
TAGTAATGTG TTGTCGGAAA CATCTGGTTC GAATTCGATT CAGATGATAC 
ATCAACCGGT TTTGAATTCA TCCCGGTTTG AGGAGAATCC GATTCCTCCT 
CCTGCTCCTT GTGAAGAGCA GACTGGTAAG AAGAGAAAGA TGAGAGGCAG 
CATCGCAACA CCAACGGTAC CGAAAGCTAA GAAGATGCGT AAACCGAAAG 
AAGAGAGAGA TGTTACTAAC AACAATGTTC AGCAGCAGCA GCAGCGTGTG 
AAACCGGTTA AGAAGAGTGT TGATCTTGTG ATTAACGGTG TGAGTATGGA 
CATTTCTGGT TTACCTGTAC CGGTTTGTAC TTGTACTGGA ACTCCTCAAC 
AATGTTACCG TTGGGGTTGC GGCGGATGGC AATCCGCTTG TTGTACGACT 
AACATTTCGG TGTATCCATT ACCGATGAGT ACTAAGCGAC GCGGTGCAAG 
GATTTCGGGT AGGAAGATGA GTCAAGGCGC GTTTAAGAAG GTTCTTGAGA 
AGTTATCAAC AGAAGGTTAT AGCTTTGGGA ATGCGATTGA TTTGAAGTCT 
CATTGGGCTA GACATGGAAC CAATAAGTTT GTCACGATCA GATAAAGTTT 
GAAAAGCTCT TGTTTTTCTT CATTGATCGT GTATATAACA ACAAAACTGT 
GACCTTTGTT TTTCCTTCTT CTTCAAGGTA ACTTCTTCGT TTTTAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT2G01930.1 [+] show detail - basic pentacysteine1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G01930.1

Model type
Protein coding
Short Description
basic pentacysteine1
Curator Summary
BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.
Computational Description
basic pentacysteine1 (BPC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 2 (TAIR:AT1G14685.1); Has 220 Blast hits to 218 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-40-G10 introduced

  • F19542 - Specific phenotypes were NOT observed.
  • F26647 - Specific phenotypes were NOT observed.
  • F29429 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found