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  3. RAFL09-40-L03

RAFL09-40-L03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08320)

full reading [+] show sequence

Nucleotide sequence: RAFL09-40-L03 - full reading 
ACTGAGCACT TTTCAAGTAG AAGAGACACA AACATCGTTA CCTTCGCCGC 
CATGGCCTCC GCACTCGAAT GCTGGACAAC ACGTAATGCC GCCGGTGGTT 
GCGCCGACGA CGATTTTGTT GACCAAGTCC TAATGTCCTC CGAAGACAGG 
TCTGAGTCCC TCACTGCTCC TCCACCTTCC GATCAAACCT CTTCCGCTAT 
GCAAAAGCGG TTTCAGCGTC TCGGCCGCAA CGTCTCCGAC GCGATCGCGT 
CGCTCAAGAA CTCTCTCAAC CTCGATTCGA GTCGAGACAA CCAAAATGCA 
GCTACCGGAG GAGGTAGAAA GCTCGTATGG GCTACTGTAG TGAGAAACCT 
TGCTAAAATG TATCCTGGAA GCCAGTTGCC TGATAAACTC GTCTCCAATC 
TCCGAAAGCA TTACGATTCT TTGCCTCTCA GTTATAGTCA GACTGGTTTC 
GATATGAAAG ATGTATTTGT ACACATAAAG TTGATAGAGC AAGCTTTTGG 
AGATGATAAT CCTGTGTTTG TGATTCAAGA GGTGTGTGAT GAGGAAGCTG 
ATGATCAGGG TTCTGTGTTT AAGCTCACAT TTGCTTGTAC TTGTTCCCTT 
CCATGGTCAA CCATTTCAGG GTCTCTTGAT GGTGCTTTGA TTTGTTGTAA 
GAAAGTACAA ATCTTTGAGA AGAAGGGGTT GACTCTTGGA GTTGTTCTTC 
TTCTGGTTGA GTCTGGACAA GAAAAAATGT TCAAAGTTAA GGTTGTGAAT 
GCCCTTAGAT CTGCGGTGAG GAAGCCCAAG TCAACCTCTG TGAAGCTCCC 
ATTTGGTCTT TGTGGCTGTG AAGAACAGAA TGCTGGTGTT GGAGAATTCG 
GGGATGTTGA TGTGGAGTCC ATTGATCAAT GTTATAGACA TGAGTTGGAT 
GATCTGAATA CTAGGATTCA GCTTCAAATG CCACCTCCAA GCTCTTCGTT 
TTCTGTATCA GTAGATGAAT GGCAGACTAT CCAATCAGGT GGTGATGATA 
TCAGAAAATG GCTACTGAAT TCAGATGATC TCGAGTTTAG TGGTCAGTTA 
GGACCAAATT CATTTAAAGG AGTTTACAGA GGAACAAAGG TGGCCATTGA 
GAAACTAAAA GGCTGTGAGA AGGGGAATTC CTATGAGTTT GCAATCCGAA 
AAGATTTCTT GGAGCTGATG ACCTGTGGAC ACAAGAGCAT TTTGCAGTTT 
TATGGTGTCT GCATCGATGA AAATCATGGA TTATGCGTGG TAACAAAGTT 
GATGCAAGGT GGTTCACTTC GTGAACTGGT GTTGAAGAAA AAGAAGCTTC 
AGACCAAGTT GATATTTCAA ATTGCTGTTG ACATAGCAGA AGGGATGAAA 
TTCATTAATG ATCATGGTGT TGCATATAGA GACCTTAACA CACAGAGAAT 
ACTATTAGAT AAGCAGTGCA ACGCTTGTTT GGGTGATTTG GGAATAGTCA 
CTGCATGCAA GAGTGTCAAC GAGGCCATGG AGTATGAAAC GGATGGCTAT 
CGATGGCTTG CACCCGAGAT AATCGCGGGA GACCCGGAGA AGACAAGAGA 
GAGTTGGATG AGCAATGCGT ATAGCTTTGG GATGGTGCTT TGGGAGATGG 
TGACAGGGGA GGAGGCATAT GGGTCTTGCT CACCAGTGCA GGCAGCGGTT 
GGGATTGCAG CGTGCGGACT AAGACCAGAT ATCCCAAAGG AGTGTCCTCA 
AGTCCTCAAA TATCTTATGA TCAAATGCTG GAACACTTGC CCTTCCACAC 
GCCTTAACTT CTCTCAAATC CACTGCATCT TGCTCCGTGC CATTTCACGG 
TAACACATTC TCTTCTACAT AGGAATTGGA AGAGTGCCTC TTTTTGAAGA 
AATGTTTAGC AAACCAATAG TTTTTGTGGG TAACAGAATA GCTTCACATC 
AATATAGCAA ATGTGATGAA GAAAGTGGTT GGTGTATATT TTGGTTAGAT 
CAGATGGTAG CAACCTTGTG GACCGGAAAG TAGAATAACA GTTTCATTAT 
CAGTTATAAG CCTCTTTGCC CAGTCCACTT TCATTTTTAC ACTTTGTTTA 
CATTGTAAAT GGACCAATAT GAGTGATTTT TTTTCTTTTC TTTTTCTATA 
AGAAAAAACA GGTACGAATG TTCGATTTCA TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT5G07140.1 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther PTHR23257:SF25 0
HMMPanther PTHR23257 0
Gene3D G3DSA:3.30.200.20 1.49999977583351e-06
Gene3D G3DSA:1.10.510.10 2.500009099162e-35
superfamily Protein kinase-like domain 2.2e-48
HMMPfam Serine-threonine/tyrosine-protein kinase 9.09999999999992e-38
ProfileScan Protein kinase, catalytic domain 0

See the detailed result >

AT5G07140.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G58520.1); Has 63076 Blast hits to 62625 proteins in 2279 species: Archae - 41; Bacteria - 4545; Metazoa - 25060; Fungi - 4515; Plants - 20509; Viruses - 254; Other Eukaryotes - 8152 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-40-L03 introduced

  • F08301 - Specific phenotypes were NOT observed.
  • F22717 - Specific phenotypes were NOT observed.
  • F24050 - Specific phenotypes were NOT observed.
  • F27127 - Specific phenotypes were NOT observed.
  • F27432 - seed::increased size / seed::increased length
  • F30015 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found