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  3. RAFL09-41-E03

RAFL09-41-E03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06249)

full reading [+] show sequence

Nucleotide sequence: RAFL09-41-E03 - full reading 
AAAAAAAAAA AAGAACAGAA GAAAACGGAA GTTTTTGTTT CTGGAGAGAA 
AACCAAAAAG TTCATTTTGT TTTTCTCTAT TTCGTCTTTC CTGCGATTCT 
GAATATCACT CTTCTTCAAT CTCTTTGTCA GAATCGTAGC ATTGGCTTGT 
GAGCTTTGAT CCTTCTTTCT TTTTTTCTTC CCGTTTGTGA AAAAAGAGAG 
ACTAGTATTT ATCATCGTTG TCACCGCCGA TCTGTCGTCG GCAGATGGCA 
AAACCATTAC TTTTACCTCC AATTAATAAC CCGGATTCGT TGGATTGTTG 
GACGTCTCTG TTTCTTCTAT CTAGTGTTTC AACTCCGGCA TAGAAAGGAT 
CTGATTTGGT TAATCTCAGA GCCCTTTTTG TAGACACATT GTAAAATTTG 
AATTGGTGAG GAGGAGTTAG AGCCGTCCGA TTGGGGTTTG ACCCGATTGA 
AGCGGAGAGG ATGGCAAAAA GTTGGTTTTT GGTTGAGAAG GCGAGAAGAT 
GTTTGAGGAC GGTGTTCTTC ATGGTTGCTA TGTTGGCTTC GCTGCTAGTT 
TCCTCGTTGC CATTGTTAGT AGCTATAGGT GATGTGTTGG TTCCCAGCTT 
CTTGTTGTCG AGCTTTACTT GTGTGACGTG TTACGGCGCC AAGGAGCATC 
TGAGGCGATA CGGTTTCAAG AGATCTTTGA CTGATATTCC TATCGTCTCT 
GTTGTCAGAT CTTTCCTTGT CATCTGTATC TATTTACTCT CGGACGTTCC 
TGCTCTCTCG CACGGTCCTT ACCTTGGAAC TGTATCTCTG TGTTCTGTGG 
TTTCGGTTCT TCTTCTTTCA GTTAAAGCTT GCCTTTTCAC TGTTAATTCT 
CAACTCAACA ACGAAGCCTC GTTCTCTCCA TCTAGGAAAC GGCTCCACCT 
GAAGAAGTCG TGGGGGATGC CGGTTTTGTT CCTCTCATCT GTGGTTTTTG 
CCCTTGGTCA TACGGTTGTA GCATACAGGA CAAGTTGCAG AGCGAGGAGG 
AAAATTTTGT ATCACCGAGT TGACCCTGAA GCTGTTCTTT CATGCAAAAG 
CATCTTCTCT GGCCACCAGA AAGTCCCGCG GTCACCCACT CCTGTGGTTG 
GAAAGGCCTC CAAGTTTGAT GGAGAAGCAA GGCGAAAGCC TTTGTCCCAC 
GATGAAGGAG AGCTTCCAGT GAGATTGCTT GCTGATGTTG ACAGTTTATT 
CGTTACAATC CGAGGCCTCA CTGTGCATTA CAAGCTTTGT TCACCTGGTT 
CACCTCGGCA GTCTATCTCC TCAAATGTTC TCGAAGCCAA TTCTAGTTAC 
AATACGCCAG AGATAATGGC AGGAAGGTCG AAGTTTGACA GAAAAGTGTT 
GAGTATGGTC ACCAAAAGCC AGCATCATCA TCACCACAGG AGCTACAACA 
GTTTGTTTAA CAATTCTTCC TTGCACGACC CTCTTCTGGA TGGTTCTCCT 
ACTTCTCCTC TTCTTTTCAA AGAGATTAAG GAAGGAACGG GACTAGTGGA 
TGACATGAAT GTATTCAATT TTGGAGCTGA GGAGCAAGAC TTGGGTGAAA 
GTGGTCAGTT TGGTGTGGTC CTGGTTCATG GATTTGGAGG AGGAGTGTTT 
TCTTGGAGGC ATGTGATGGG TTCACTGGCT CAGCAGCTTG GTTGTGTTGT 
CACTGCATTT GATAGGCCTG GTTGGGGATT AACGGCCAGG CCACATAAGA 
ATGATTTGGA AGAAAGACAG CTGCTCAATC CTTATTCACT CGAAAATCAG 
GTAGAGATGC TTATTGCTTT CTGTTATGAG ATGGGGTTCT CTTCAGTAGT 
ATTTGTTGGT CATGATGACG GAGGTCTACT TGCTCTCAAA GCTGCACAAA 
GATTGATGGC AACAAACGAT CCCATCAAAG TCGTGGTCAA AGGAGTTGTC 
TTGCTTAATA CTAGCTTATC AAGGGAAGTA GTTCCAGCTT TTGCAAGAAT 
ACTTCTGCAC ACATCACTAG GGAAGAAGCA CCTCGTTCGC CCTCTTTTAC 
GCACTGAGAT AGCTCAGGTG GTGAATCGCC GTGCTTGGTA TGATCCTGCC 
AAGATGACTA CAGACGTCCT ACGGCTATAC AAGGCCCCAT TACACGTAGA 
AGGCTGGGAT GAGGCACTTC ATGAGATAGG TAGACTTTCA TCTGAGATGG 
TGCTTGCACC TCAAAATGCA GCTTCGCTTC TGAAGGCTGT TGAAAACCTG 
CCAGTGCTAG TCATTGCTGG GGCCGAAGAC GCCCTTGTGC CATTGAAGTC 
CTCCCAAGGA ATGGCTTCTA AACTCCTTAA CTCTAGACTA GTAGCAATCT 
CAGGATGTGG GCATTTACCA CATGAGGAGT GTCCCAAGGC GCTTCTTGCA 
GCCATGTCCC CGTTCATCAC TAGACTTGTA ATTAGGCCAG ATCTCCAGAG 
TCAATAGCCA GATCACTTGT TTTTCTTGTC GTCTTCTTAG CTTACAATCG 
ATTAGTGTCG CCCAAAAATT TGAGGCCCTG CTAGGTAAAT TCATCTAATG 
AGTGTTGTAA CCTTTCCCTT CTCTTGTGTT TTGTATGATT CGAGGGTGAT 
TTTATTTATT AAACACTTGA AGATGAGTGT GGCACAGAAT CGTGCAAGTC 
TCTGTAAATT TATCCGGTTT GGAATACGAA GTAAATTGCT TTCGTTTGCC 
CAAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT1G15490.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily alpha/beta-Hydrolases 1.1e-45
HMMPfam Alpha/beta hydrolase fold-1 4.4e-10
HMMPanther ALPHA/BETA HYDROLASE 2.1e-82
HMMPanther ALPHA/BETA HYDROLASE RELATED 2.1e-82
Gene3D no description 1.6e-41

See the detailed result >

AT1G15490.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G80280.1); Has 5830 Blast hits to 5818 proteins in 1057 species: Archae - 56; Bacteria - 4179; Metazoa - 223; Fungi - 71; Plants - 420; Viruses - 1; Other Eukaryotes - 880 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-41-E03 introduced

  • F12025 - Specific phenotypes were NOT observed.
  • F20435 - seed::increased size

Mutant lines with disrupted or induced

3 mutant lines found