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  3. RAFL09-41-F04

RAFL09-41-F04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08329)

full reading [+] show sequence

Nucleotide sequence: RAFL09-41-F04 - full reading 
ATTAATCCAC TGAAACAATC ACTATTCATT CTCTTTCCTT AAGTGTCAAA 
CTCTTGAAAA AACTACTTTG AAGGAAAAAA TGTCTAAGAA GAAGAAAGGC 
AGCAACAACT TTAAGCTTCT CTGTTTCTTC CTGTTTTTGG GTGGTTTGGT 
TCAGACAGAT GCTTCTTTTG GAGTAGGAGG CGGCGTTGGA GTAGGAATCG 
GCGGCGGCGG CGGTGGCGGT GGCGGTGGTG TTTGGGTTGG CGGTGGATAC 
AACAACGGTG GAAATCGTAA TGCTGTTCCA GGATCATCAG CTCCAAACAG 
GGTAGCTTAC AATGCTCTTC AAGTTTGGAA ATCAGCCATG AGAGAGGATC 
CATCAAATGT TCTCAAAACA TGGGTTGGAT CAGATGTTTG TTCTTACAAA 
GGTGTGTTCT GTTCTGGTCA ATCTATAACC TCTATAGATC TTAACCATGC 
AAATCTCAAA GGCACACTTG TCAAAGACCT AGCTTTACTC TCAGACCTCA 
ATATTCTCCA TCTCAACAGT AACAGATTCT CAGGGCAAAT CCCAGATTCT 
TTCAAATCTT TAGCTTCTCT TCAAGAACTT GATCTAAGCA ACAATAAACT 
CTCAGGTCCT TTCCCTTTAG TCACACTCTA CATACCAAAT CTGGTTTACC 
TCGATCTCCG GTTTAATAGT TTAACCGGTT TCATCCCTGA AGAGCTTTTC 
AACAAACGGT TAGACGCGAT TCTCCTCAAT AACAATCAAT TCGTCGGAGA 
AATCCCAAGA AACCTCGGAA ATTCTCCGGC TTCGGTTATT AATCTCGCGA 
ATAACAGATT TTCCGGCGAA ATTCCGACGA GTTTTGGTCT GACGGGATCG 
AGGGTTAAGG AAGTTTTGCT TTTGAATAAC CAGTTAACCG GTTGTATACC 
GGAATCTGTT GGTATGTTCT CTGAAATTGA AGTCTTTGAC GTTAGCTACA 
ATGCATTGAT GGGTCATGTT CCAGATACGA TCTCTTGCTT GTCGGCGATT 
GAAATTTTGA ATCTTGCTCA CAATAAATTC TCTGGGGAGG TTCCTGATTT 
GGTTTGTTCG TTGAGGAATC TTATTAATCT CACTGTTGCG TTCAATTTCT 
TCTCTGGGTT TAGCTCTGAA TGTTCTTCCA GGGTTAGTTT CGGGTTTGAT 
TTCGTTGGGA ATTGTATTCC CGGGAGGAAT TCGCAGCGGC CGCAGCCGGA 
TTGTTCCGGT TATTCCGGCG GAGCTATGAG CTGTTTTAGG ATTCCGACGC 
AGCCTTTGGC TTGTGCTGCG ATAAGTGTTG GATTGAGAGA GAGTAATAAT 
CAATACTACA CTTCATCTCC TCCATGAAAG TTTCTAAAGT TAGAAGCTTT 
TTTTTATTAA TGGTTGATGC TGAATGATCT ATCTTTTTTG TAACTTATTA 
ATTAGTTGAT TAGTGACCAA ATTAAACGTT AATTCCTCTT CTGTGTAATC 
CAATCGTTGC TAATGTTGTT TTGTAAGCAG AAGAATTTTG TAAAAATCTA 
ACGTTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT4G29240.1 [+] show detail - Leucine-rich repeat (LRR) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily L domain-like 4.9e-54
HMMPanther LRR RECEPTOR-LIKE KINASE 5.6e-48
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.6e-48
HMMPfam Leucine-rich repeat 0.36
HMMPfam Leucine-rich repeat 0.067
HMMPfam Leucine-rich repeat 0.052
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 0.00000068
Gene3D no description 8.9e-54

See the detailed result >

AT4G29240.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G19780.1); Has 63461 Blast hits to 20951 proteins in 903 species: Archae - 14; Bacteria - 2781; Metazoa - 8815; Fungi - 480; Plants - 47912; Viruses - 34; Other Eukaryotes - 3425 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-41-F04 introduced

  • F06433 - Specific phenotypes were NOT observed.
  • F09535 - rosette leaf::increased size / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / whole plant::increased height / stem internode::decreased length / root::present in greater numbers in organism
  • F24119 - rosette leaf::decreased size / rosette leaf::abnormal / sporophyte vegetative stage::decreased speed / fruit::decreased length

Mutant lines with disrupted or induced

4 mutant lines found