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  3. RAFL09-41-F04

RAFL09-41-F04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08329)

full reading [+] show sequence

Nucleotide sequence: RAFL09-41-F04 - full reading
ATTAATCCAC TGAAACAATC ACTATTCATT CTCTTTCCTT AAGTGTCAAA 
CTCTTGAAAA AACTACTTTG AAGGAAAAAA TGTCTAAGAA GAAGAAAGGC
AGCAACAACT TTAAGCTTCT CTGTTTCTTC CTGTTTTTGG GTGGTTTGGT
TCAGACAGAT GCTTCTTTTG GAGTAGGAGG CGGCGTTGGA GTAGGAATCG
GCGGCGGCGG CGGTGGCGGT GGCGGTGGTG TTTGGGTTGG CGGTGGATAC
AACAACGGTG GAAATCGTAA TGCTGTTCCA GGATCATCAG CTCCAAACAG
GGTAGCTTAC AATGCTCTTC AAGTTTGGAA ATCAGCCATG AGAGAGGATC
CATCAAATGT TCTCAAAACA TGGGTTGGAT CAGATGTTTG TTCTTACAAA
GGTGTGTTCT GTTCTGGTCA ATCTATAACC TCTATAGATC TTAACCATGC
AAATCTCAAA GGCACACTTG TCAAAGACCT AGCTTTACTC TCAGACCTCA
ATATTCTCCA TCTCAACAGT AACAGATTCT CAGGGCAAAT CCCAGATTCT
TTCAAATCTT TAGCTTCTCT TCAAGAACTT GATCTAAGCA ACAATAAACT
CTCAGGTCCT TTCCCTTTAG TCACACTCTA CATACCAAAT CTGGTTTACC
TCGATCTCCG GTTTAATAGT TTAACCGGTT TCATCCCTGA AGAGCTTTTC
AACAAACGGT TAGACGCGAT TCTCCTCAAT AACAATCAAT TCGTCGGAGA
AATCCCAAGA AACCTCGGAA ATTCTCCGGC TTCGGTTATT AATCTCGCGA
ATAACAGATT TTCCGGCGAA ATTCCGACGA GTTTTGGTCT GACGGGATCG
AGGGTTAAGG AAGTTTTGCT TTTGAATAAC CAGTTAACCG GTTGTATACC
GGAATCTGTT GGTATGTTCT CTGAAATTGA AGTCTTTGAC GTTAGCTACA
ATGCATTGAT GGGTCATGTT CCAGATACGA TCTCTTGCTT GTCGGCGATT
GAAATTTTGA ATCTTGCTCA CAATAAATTC TCTGGGGAGG TTCCTGATTT
GGTTTGTTCG TTGAGGAATC TTATTAATCT CACTGTTGCG TTCAATTTCT
TCTCTGGGTT TAGCTCTGAA TGTTCTTCCA GGGTTAGTTT CGGGTTTGAT
TTCGTTGGGA ATTGTATTCC CGGGAGGAAT TCGCAGCGGC CGCAGCCGGA
TTGTTCCGGT TATTCCGGCG GAGCTATGAG CTGTTTTAGG ATTCCGACGC
AGCCTTTGGC TTGTGCTGCG ATAAGTGTTG GATTGAGAGA GAGTAATAAT
CAATACTACA CTTCATCTCC TCCATGAAAG TTTCTAAAGT TAGAAGCTTT
TTTTTATTAA TGGTTGATGC TGAATGATCT ATCTTTTTTG TAACTTATTA
ATTAGTTGAT TAGTGACCAA ATTAAACGTT AATTCCTCTT CTGTGTAATC
CAATCGTTGC TAATGTTGTT TTGTAAGCAG AAGAATTTTG TAAAAATCTA
ACGTTAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT4G29240.1 [+] show detail - Leucine-rich repeat (LRR) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily L domain-like 4.9e-54
HMMPanther LRR RECEPTOR-LIKE KINASE 5.6e-48
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5.6e-48
HMMPfam Leucine-rich repeat 0.36
HMMPfam Leucine-rich repeat 0.067
HMMPfam Leucine-rich repeat 0.052
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 6.8e-07
Gene3D no description 8.9e-54

See the detailed result >

AT4G29240.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G19780.1); Has 63461 Blast hits to 20951 proteins in 903 species: Archae - 14; Bacteria - 2781; Metazoa - 8815; Fungi - 480; Plants - 47912; Viruses - 34; Other Eukaryotes - 3425 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-41-F04 introduced

  • F06433 - Specific phenotypes were NOT observed.
  • F09535 - rosette leaf::increased size / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased size / whole plant::increased height / stem internode::decreased length / root::present in greater numbers in organism
  • F24119 - rosette leaf::decreased size / rosette leaf::abnormal / sporophyte vegetative stage::decreased speed / fruit::decreased length

Mutant lines with disrupted or induced

4 mutant lines found