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  3. RAFL09-41-F06

RAFL09-41-F06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06254)

full reading [+] show sequence

Nucleotide sequence: RAFL09-41-F06 - full reading 
ACAGCTGCAA CACTATCTTC TCAGAAATGG TAACCGAAGC TTTCGAATTC 
GTCGCCGTTC CTTTCAATTC CGATGGCTGG GGACCTCCAG ACGCTTCCGA 
CGTTTCCTCC TCCGCCTCTC CCACCAGCGT CGCCGCCGCT AATCTTCTCC 
CGAACGTTCC TTTCGCTTCC TTCTCCCGTT CCGATAAGCT CGGCCGTGTA 
GCTGATTGGA CTCGCAATCT CTCTAATCCA TCCGCTCGTC CTAACACCGG 
ATCCAAATCA GATCCGTCTG CAGTTTTCGA TTTCTCCGCT TTCGCAATCG 
ACGAAGGCTT CGGTCTCGCT TCCTCCGGTG GTAATCCCGA CGAAGACGCA 
GCTTTCCGTC TCGTCGACGG TAAACCTCCG CCGCGTCCTA AATTCGGACC 
TAAATGGCGT TTCAATCCTC ACCACAATCG GAATCAGCTT CCTCAACGGC 
GAGATGAAGA AGTTGAAGCT AAGAAGCGTG ATGCTGAGAA GGAACGAGCT 
CGTCGTGATC GTCTCTACAA TAACAACCGT AACAACATCC ATCACCAACG 
CCGTGAAGCT GCCGCTTTCA AATCATCCGT TGATATTCAG CCGGAGTGGA 
ACATGCTTGA GCAGATCCCT TTCTCAACAT TCTCGAAGCT CTCGTACACA 
GTTCAAGAAC CAGAAGATCT TCTTCTCTGT GGTGGCCTTG AGTACTACAA 
CCGCCTTTTC GATCGCATAA CGCCGAAAAA CGAACGCAGA CTCGAGCGTT 
TCAAGAACAG GAACTTCTTC AAAGTCACTA CTAGTGATGA TCCTGTGATT 
AGGCGTTTAG CTAAGGAAGA CAAAGCTACT GTTTTCGCTA CTGATGCTAT 
ATTAGCTGCT CTTATGTGTG CTCCTAGATC TGTTTACTCT TGGGATATTA 
TTATTCAACG TGTTGGTAAC AAACTGTTCT TTGACAAGAG AGATGGATCA 
CAGCTTGATT TGTTGTCTGT GCATGAGACA TCTCAAGAGC CATTGCCTGA 
GTCTAAAGAT GATATCAATT CTGCTCATTC TCTAGGTGTG GAAGCTGCTT 
ACATCAATCA GAACTTTTCG CAGCAGGTTT TGGTTAGAGA TGGAAAGAAG 
GAAACTTTTG ATGAAGCCAA TCCATTTGCT AATGAAGGTG AAGAGATTGC 
TTCTGTTGCT TATAGGTATA GAAGGTGGAA GCTTGATGAT AATATGCATC 
TTGTTGCGAG GTGTGAGTTA CAGAGTGTTG CTGATCTCAA CAACCAAAGG 
TCGTTTCTTA CTTTGAATGC TCTTAACGAG TTTGATCCTA AGTACTCTGG 
TGTTGATTGG AGACAGAAGC TTGAAACTCA GAGAGGTGCG GTTTTAGCTA 
CAGAATTGAA GAACAATGGA AATAAGTTGG CTAAATGGAC TGCACAAGCT 
TTATTGGCTA ATGCTGATAT GATGAAGATT GGTTTTGTCT CTAGGGTTCA 
TCCTCGTGAT CATTTCAACC ATGTTATATT ATCTGTTTTG GGGTATAAGC 
CGAAGGATTT CGCTGGACAG ATTAATCTCA ACACTTCTAA CATGTGGGGG 
ATTGTGAAAT CCATAGTTGA TCTGTGTATG AAACTAAGCG AAGGGAAGTA 
TGTTCTTGTG AAGGATCCAT CGAAGCCTCA AGTGAGGATT TATGAGGTTC 
CACCTGATGC TTTCGAGAAT GATTACGTTG AGGAACCGTT GCCTGAAGAT 
GAACAGGTTC AGCCAACTGA GGAAAACACA GAGGGAGCAG AAGCAAGTGT 
AGCTGCAACT AAAGAAACCG AGGAGAAGAA AGCTGATGAT GCTCAAGCTT 
GATGGTTATA AAGTCAGGTC CAAAGTCTAC ACCTTTCGTT TCTGGGTTCT 
TTTGAGAGTT GAAGCTTCAA TCAAACAACA ACAATGGAGG TTCCTTTTTT 
AATTATCTTG TCCTTTTTCA AATTTTTGTG GTACTGCTGT AATTTTAAGT 
CAGAAATGAG ATTGTAGAAC ACTATCTTCG TGACATCTTT TGGAAAATCA 
TTACGGATTG TTTACAGAAC AGAAATCTTT TTACTATTAA AAAAAAAAAA 
AAAA

Gene models with high sequence identity

  1. AT4G20980.1 [+] show detail - Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
ProfileScan Immunoglobulin-like 6.56
HMMPIR Eukaryotic translation initiation factor 3, subunit 7 0
HMMPanther Eukaryotic translation initiation factor 3, subunit 7 1.9e-292
HMMPfam Eukaryotic translation initiation factor 3, subunit 7 4.4e-204

See the detailed result >

AT4G20980.1

Model type
Protein coding
Short Description
Eukaryotic translation initiation factor 3 subunit 7 (eIF-3)
Computational Description
Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (TAIR:AT5G44320.1); Has 517 Blast hits to 503 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 127; Plants - 75; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-41-F06 introduced

  • F09508 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds