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  3. RAFL09-41-H08

RAFL09-41-H08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06259)

full reading [+] show sequence

Nucleotide sequence: RAFL09-41-H08 - full reading 
TCTCCTATAA ATCTCTCCGT CTTCTCTCTT CTCTCATTTC ACGTCGGAGA 
TCATTTTCTC CTCCTCCGCC TCCGCCTCCA CCGCCACCGC CACCGCCGCC 
GCCGACGACT TTTCTCACTT ACTCAACACC AGAGATCTTG GTTTAGTGTT 
ATAATGGAAG GTGTTGGACT AAGAGCTGTA GGATCACACT GTTCTTTATC 
TGAGATGGAT GATCTTGATT TGACTCGAGC TTTGGATAAA CCAAGATTGA 
AGATCGAAAG GAAGAGATCG TTTGATGAAA GATCGATGAG TGAGCTATCG 
ACTGGTTACA GTAGACATGA CGGTATACAC GATTCGCCGC GAGGTAGATC 
GGTGCTTGAT ACGCCTCTTT CTTCTGCTAG AAACTCCTTT GAGCCTCATC 
CTATGATGGC TGAAGCTTGG GAGGCTTTAA GAAGGTCAAT GGTCTTCTTC 
CGTGGTCAAC CTGTTGGTAC TCTTGCCGCG GTTGATAATA CTACCGATGA 
AGTCTTGAAC TATGATCAGG TGTTTGTGAG GGATTTTGTA CCGAGTGCGT 
TGGCGTTTCT GATGAATGGA GAACCGGATA TAGTGAAGCA TTTTTTGCTT 
AAGACACTTC AGCTGCAAGG TTGGGAGAAA CGTGTGGATC GGTTTAAGTT 
AGGAGAAGGT GTGATGCCTG CAAGTTTCAA GGTGCTTCAT GATCCTATCC 
GTGAAACGGA TAACATTGTT GCGGATTTCG GTGAGAGTGC TATTGGACGT 
GTGGCTCCTG TAGATTCAGG GTTCTGGTGG ATTATTCTTC TTCGTGCTTA 
TACCAAATCT ACTGGAGATT TGACTCTCTC TGAGACACCA GAGTGTCAAA 
AGGGAATGAA ACTGATCTTG TCTTTGTGCT TAGCTGAAGG GTTTGACACG 
TTTCCTACAC TGCTTTGTGC TGATGGATGT TCCATGATTG ATCGAAGAAT 
GGGTGTTTAT GGGTATCCCA TTGAGATCCA AGCGTTGTTC TTCATGGCTT 
TGAGATCTGC TTTGTCGATG TTAAAGCCCG ATGGAGATGG CAGAGAGGTC 
ATTGAGAGGA TCGTTAAGCG ACTTCATGCC TTGAGCTTCC ATATGCGCAA 
TTACTTCTGG CTTGATCATC AGAACCTCAA TGACATTTAC AGGTTCAAGA 
CTGAGGAATA CTCTCACACG GCGGTGAACA AGTTCAATGT GATGCCTGAT 
TCTATACCCG AGTGGGTTTT CGACTTCATG CCTCTCCGTG GAGGCTACTT 
TGTGGGAAAC GTAGGACCTG CCCATATGGA TTTCCGGTGG TTCGCACTCG 
GTAATTGTGT CTCCATACTT TCTTCATTGG CCACTCCAGA TCAATCCATG 
GCCATTATGG ACCTCCTTGA GCACCGGTGG GCAGAGCTTG TAGGTGAGAT 
GCCTCTCAAG ATTTGTTATC CATGCCTCGA GGGCCATGAG TGGCGCATCG 
TTACTGGCTG TGACCCCAAG AACACACGGT GGAGCTACCA CAATGGTGGA 
TCTTGGCCAG TTTTGCTGTG GCAGCTAACA GCAGCGTGCA TTAAGACAGG 
GAGACCGCAG ATCGCAAGAC GCGCGGTTGA CCTCATAGAA TCGCGTCTTC 
ACCGAGACTG TTGGCCAGAG TATTACGACG GTAAGCTCGG AAGGTACGTT 
GGAAAACAGG CAAGGAAATA CCAGACTTGG TCAATCGCAG GTTACTTAGT 
GGCGAAAATG TTGCTAGAAG ATCCTTCACA CATTGGTATG ATCTCTCTTG 
AAGAAGACAA ACTCATGAAA CCAGTCATCA AGCGATCTGC GTCTTGGCCA 
CAACTCTGAA AAACCGCTTT AGGTTTTTGT TCCGGTTCTA ATATTTGCCA 
CGATATGATT TTTTGTTGTT GTTGTTTGTA TGATAATGTT ATTGAAAACT 
TGTGCGGGGA CATAGACTTT TTATTGATTG CTTTCTTTCT TGCTTTGCAA 
GTAAGGAAAA AGAAAATGGG AAAAGCTCGT TTGCCGTCAA AAAAAAAAAA 
AAAA

Gene models with high sequence identity

  1. AT1G35580.2 [+] show detail - cytosolic invertase 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Six-hairpin glycosidase-like 1.8e-24
HMMPfam Plant neutral invertase 6.7e-242

See the detailed result >

AT1G35580.2

Model type
Protein coding
Short Description
cytosolic invertase 1
Curator Summary
Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.
Computational Description
cytosolic invertase 1 (CINV1); FUNCTIONS IN: protein binding, beta-fructofuranosidase activity; INVOLVED IN: carbohydrate metabolic process, sucrose catabolic process, using invertase or sucrose synthase, root development, cellular amino acid metabolic process; LOCATED IN: cytosol, nucleus, plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plant neutral invertase (InterPro:IPR006937), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: cytosolic invertase 2 (TAIR:AT4G09510.1); Has 684 Blast hits to 681 proteins in 93 species: Archae - 0; Bacteria - 123; Metazoa - 0; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-41-H08 introduced

  • F00805 - seed::increased size / seed::increased length
  • F11923 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found