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  3. RAFL09-41-P11

RAFL09-41-P11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09761)

full reading [+] show sequence

Nucleotide sequence: RAFL09-41-P11 - full reading 
ATAAAGAAGT AAAGCTTTGC CGGAGATTTA GCAAACACAA ACACAAAAAA 
CAAAACCAAC TCAGACGAAT GTGATTTTTT CTTCTTGAGT GAATTGTTGT 
AAAAAAATGA TGATCGGAGA ATCTCATCGT GGTTTTAATC CAACGGTTCA 
TATTCCTCCA TGGCCACTTT CTGAAGATCT AACGGTGTCT GATATTTACG 
GAAGTCCAGA CGGAGGAAGT AGTATGATGG AAGCTTTGGC TGAGTTACAA 
CGTTATCTTC CGTCAAACGA ACCGGATCCG GATTCAGATC CGGATCTCTC 
GGGTCCGGAT TCACCAATCG ATGCTTATAC ATGCGATCAT TTTCGGATGT 
ATGAGTTTAA AGTGAGACGT TGTGCTCGTG GCCGGAGCCA TGATTGGACG 
GAGTGTCCTT ACGCTCATCC CGGAGAAAAA GCTCGCCGTC GTGATCCGAG 
GAAGTTTCAT TACTCCGGTA CGGCGTGTCC TGAGTTTCGT AAAGGTTGTT 
GCAAGAGAGG AGACGCATGT GAGTTTTCTC ATGGTGTTTT TGAGTGTTGG 
CTTCACCCGG CGCGTTACCG GACTCAGCCG TGTAAAGACG GTGGTAACTG 
TCGCCGTCGT GTTTGTTTCT TTGCTCATTC GCCGGATCAG ATTAGGGTTT 
TGCCTAATCA AAGCCCTGAT CGTGTTGATT CGTTCGACGT TTTGTCTCCT 
ACGATTCGTA GAGCGTTTCA GTTTTCGATT TCTCCGTCGT CTAACTCGCC 
GCCGGTGAGT CCACGAGGTG ACTCGGACTC GTCGTGTTCG TTACTGAGTC 
GTTCACTCGG GTCTAATCTG GGAAACGACG TCGTTGCGTC TCTCAGGAAT 
CTGCAACTTA ATAAAGTGAA GTCTTCTCTT TCGTCGTCAT ACAACAATCA 
AATCGGAGGA TACGGATCCG GATTCGGGTC GCCTCGTGGA TCGGTTTTGG 
GTCCTGGTTT CCGTAGCTTA CCAACTACAC CGACCCGACC TGGTTTTATG 
AACATTTGGG AGAATGGCTT GGAGGAAGAA CCGGCGATGG AACGGGTCGA 
GTCGGGTCGT GAACTGCGAG CGCAGCTGTT CGAGAAGCTG AGCAAAGAGA 
ATTGCATGGG TCGGATTGAA CCGGATCCGG ATCAGGGAGC GGGTGATACT 
CCTGATGTCG GGTGGGTCTC TGACTTGGTT ATGTGATTTG AACCGGATTC 
GTAAACCGGA GTGTCTGAAA TTTCTTTGAT AAAGATTAAT TAAAGGATTA 
TTATCGGCAT GGGAGGTTTT TTAATGGATC TCTTCTTAGG AAAAGAGGAG 
ATTTCTCTGC AAGTTTTTTT TTTGTATATT TATTATTTCC TAATTTCGTA 
TAATCTCTGT TCCATAATCG ATGATTCGAG GGAGATTCCT CAGTGTATAG 
GAGTTGCTTA GGATTTTTCA TTATGATGGA TTCACTAATA TTGATATTGT 
TGGTTATTGT TTTTTTTATA TATTATGATG TAAGATGCAA GTCGCAATGT 
AATTATTAAA TATCTTATGA ATGAAATGAG AATGTAAATT ATTTAT

Gene models with high sequence identity

  1. AT2G19810.1 [+] show detail - CCCH-type zinc finger family protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
ProfileScan Zinc finger, CCCH-type 6.484
ProfileScan Zinc finger, CCCH-type 12.699
ProfileScan Zinc finger, CCCH-type 6.568
superfamily CCCH zinc finger 0.0031
superfamily CCCH zinc finger 0.018
HMMPanther UNCHARACTERIZED 0.00000035
HMMSmart Zinc finger, CCCH-type 0.00012
HMMSmart Zinc finger, CCCH-type 0.53

See the detailed result >

AT2G19810.1

Model type
Protein coding
Short Description
CCCH-type zinc finger family protein
Computational Description
CCCH-type zinc finger family protein; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT4G29190.1); Has 721 Blast hits to 690 proteins in 126 species: Archae - 0; Bacteria - 0; Metazoa - 152; Fungi - 6; Plants - 412; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-41-P11 introduced

  • F23510 - seed::increased size
  • F24212 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found