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  3. RAFL09-42-B21

RAFL09-42-B21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08342)

full reading [+] show sequence

Nucleotide sequence: RAFL09-42-B21 - full reading 
AAAGCATAGG AGGAACAACA CAAACATGGG TTCAAGTACA ACAACACGAC 
GAATCACTTA AGCTCAACAC GACAACACCT TTGACTCTAT CTTTCTCATC 
TCCAAATAAA AACCAAACTA AACCATCACA GAAGCTGAAA AAGTTCAAAA 
CTTTAAGGTA CAAGATGGGA ATTTTGTCGG ACGACGTAGT GATAATCAGT 
CAATCGGAGA AAGAAGGTGA CCCGAGTGTT ATAACCATCA ATTGTCCTGA 
CAAAACTGGT CTGGGTTGTG ATCTCTGTCG TATCCTCCTC TTCTTCGGCC 
TCAACATTGT CAGAGGAGAT GTCTCAACTG ATGGAAAATG GTGCTACTTG 
GTCTTCTGGG TGATTGGGAA ACCAAACACG AGATGGAATC TGTTGAAGAT 
GAGACTTGTA GAGGCAAGTC CTTCTTTTTC TTGGGCCTTT GGTATCTCAA 
GATGTTACCT TTCTGATTCT GAGTCTCAGC CTCCCAAGCT TCCTGATCTT 
TTCTTATTGA AGCTAGCTTG TTCTGACCGC ACAGGGCTTC TTTATGATGT 
CACAGAGGTT CTTTACAAGC TTGAGATTAA CATTGAGAAA GTTAAGATAT 
CGACTACCCC TGATGGAAAA GTGATGGACT TGTTCTTTGT CACAGACACT 
AGAGAGCTTT TAGGGACGGT TAAGAGGCGG AATGAAGTGT ATGAGTACCT 
GAGAGATGCT ATAGGAGATT CAATGATCAG CTATGACATT GAACTTGTTG 
GCCCTGAAAT CACAGCTTGC TCAACTTCCT CGTCGGTTGC AGAAACATTG 
TTCTCCTCGG ATGTGTCGGG AGAGCATTCG AGTGGGTTAC ACACTTCAAG 
CAATGTTTCT ATTGCAGTTG ACAACTCGCT AAGCTCAGCT CACACCCTCA 
TTCATATCAC TTGTCAAGAT CACAAAGGTC TTCTCTATGA TATTATGAGG 
ACCTTCAAGG ATTTCAACAT TCAGATCTCA TATGGGCGTT TTACAATCAA 
ACTAGGAAAG AACTGTGAGA TCGACTTGTT CATAGTGCAA TCTGATGGCC 
GAAAGATCCT TGACTCGAGC AAGCTAAATG CATTGATTAC TCGTTTAAGA 
GCAGAGCTAC AGCAACCTCT GAGAGTGGTA ATGATGAATC GAGGTCCAGA 
TACTGAACTT CTAGTCACAA ACCCAGTTGA GTTATCAGGA AAGGGACGGC 
CACAAGTCTT CCACGACATA GCACTTGCCC TCAAGAAGAT CGATACCTGC 
ATCTTCTCGG CTGAAATTGG AAGACACGTG ACTGGAGACA GAGAATGGGA 
GGTGTACAAA GTGTTGATCA ACGAAGAAGA CAGCTTACCA ATCCCGAGAA 
GCAAGATAGA GGAAGAAGTA TGGAAAACTT TGATGGGCTG GGAATGAAAA 
TCTTTCAGAG TATAGGACCA TTAGCTAACC TCAGACTCAT CGAAAGAGTA 
TGGCTATAAG ATTTGTCACT TTATGATGCA ATGAGTGTAT GTAGATTAAT 
ATGATACGAG GAGATATATC TGATAAGCCA CAGTGTGTAT ATATGGTTTG 
AGTCTTTCTT TTTGTGTTGA TGAGAAATTG TAAGTAGAGA AAAGCAGAAC 
GTTGGAATGT TGTAAATGAG TACTGTGTGG GTTTCATAG

Gene models with high sequence identity

  1. AT2G36840.1 [+] show detail - ACT-like superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily ACT-like 1.7e-10
superfamily ACT-like 2e-09
superfamily ACT-like 2.7e-08
HMMPfam Amino acid-binding ACT 3.4e-08

See the detailed result >

AT2G36840.1

Model type
Protein coding
Short Description
ACT-like superfamily protein
Computational Description
ACT-like superfamily protein; FUNCTIONS IN: amino acid binding; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT2G39570.1); Has 798 Blast hits to 670 proteins in 149 species: Archae - 0; Bacteria - 272; Metazoa - 0; Fungi - 7; Plants - 430; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-42-B21 introduced

  • F08423 - seed::increased size / seed::increased length
  • F23303 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found