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RAFL09-42-D13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09763)

full reading [+] show sequence

Nucleotide sequence: RAFL09-42-D13 - full reading 
ACAAGTTTGT CGGATCAATC CATTTTAACT CCGATCCATG ACTACGACTA 
GGCGGAAAAA TACACATTGG TGTCATACTT GTAGACGAGG AATCCATCTT 
CAAGGAGAAG GCAGAAGAGA AGGAGCTTGC ATTTACTGTG GTAACACCTT 
TCTTGAAAGG CTATATGAGA ATGTTGAACT AAGCCCTTTT GATTTATTCG 
GATTAGCCTA CGAAGAAGCT CGTAACCGTC GCAACAACAG AAGATCGGTT 
ATAGGAGAAC AACTAAGTTT TGAAGAGTTG TTTAACCGGC TCCCAGCACT 
ACAAGACCGT CGTGGTCCTC CTCCAGCATC ACTAGCCGCG ATTAACTCAT 
TGCAAAAGAT CAAAATCAGG CAGAAGCATC TCGGTTTAGA TCCCTATTGT 
CCGGTTTGCC AAGACCAGTT TGAAATCGGA TCAGATGCAA GAAAAATGCC 
GTGTAAACAT ATCTACCATT CTGAATGTAT ACTCCCGTGG TTAGTCCAGC 
GTAATACTTG CCCCGTCTGC CGCAAAGAAC TTCCACAAGA CCGAAATAAT 
AGCCGGAAAA ATCCATTGTG GCATCTGTGG CCGTTCAGGT CCTCTGGTTT 
GGCCTCAAAC CATAATGGAT CATCACCTTT CCATTGAGAT GCTAGCTTTT 
GAATCAATCC ATGTGCATGT ACGTAGTATA TGATGATATT TTATTTTTCC 
ATGATAAAAT GTTGCTTTTT TCAATATATT GGCATGTACA AAAGGGTTTT 
GTAGTCTTAT TAATGTATGA AAAATATTGT TTATCT

Gene models with high sequence identity

  1. AT3G10815.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, RING-type 6.4e-07
HMMPfam Zinc finger, C3HC4 RING-type 2.4e-07
Gene3D no description 1e-12
superfamily RING/U-box 2.6e-15
ProfileScan Zinc finger, RING-type 12.091
HMMPanther RING ZINC FINGER PROTEIN 6.4e-40

See the detailed result >

AT3G10815.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING-H2 finger C1A (TAIR:AT2G40830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-42-D13 introduced

  • F29927 - rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::abnormal

Mutant lines with disrupted or induced

1 mutant line founds