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  3. RAFL09-42-D18

RAFL09-42-D18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08346)

full reading [+] show sequence

Nucleotide sequence: RAFL09-42-D18 - full reading 
ACCTATGAGC GATGGTGTTT TGGTAAATAC TTGGGAGGAG TTACAAGGAA 
ACACTCTCGC TGCGCTTAGA GAGGACGAAG AATTGAGCCG GGTCATGAAA 
GTACCGGTTT ATCCTATTGG GCCAATTGTT AGGACTAACC AGCATGTAGA 
CAAACCCAAT AGTATATTCG AGTGGCTAGA CGAGCAACGG GAAAGGTCAG 
TGGTGTTTGT GTGTTTAGGG AGCGGTGGAA CGTTGACGTT TGAGCAAACA 
GTGGAACTCG CTTTGGGTTT AGAGTTAAGT GGTCAAAGGT TCGTTTGGGT 
TCTACGTAGG CCCGCTTCAT ATCTCGGGGC GATCTCCAGC GATGATGAAC 
AGGTAAGTGC CAGTCTACCT GAAGGTTTCT TGGACCGCAC GCGTGGTGTG 
GGGATTGTGG TTACGCAATG GGCACCACAA GTTGAGATCT TGAGCCATAG 
ATCGATCGGT GGGTTCTTGT CTCACTGCGG TTGGAGTTCG GCTTTGGAAA 
GTTTGACTAA AGGAGTTCCG ATCATCGCTT GGCCTCTTTA TGCGGAGCAG 
TGGATGAATG CCACGTTATT GACTGAGGAG ATCGGTGTGG CCGTTCGTAC 
ATCGGAGTTA CCGTCGGAGA GAGTCATCGG AAGGGAAGAA GTGGCATCTC 
TGGTGAGAAA GATTATGGCG GAAGAGGATG AAGAAGGACA GAAAATTAGG 
GCTAAAGCTG AGGAGGTGAG GGTTAGCTCC GAACGAGCTT GGAGTAAAGA 
CGGGTCATCT TATAATTCTC TATTCGAATG GGCAAAACGA TGTTATCTTG 
TACCGTGATT CGAGAATAAC ATCATGAACA ACAATTTCTG TTTAAGATAT 
CAACTTTTTC TATATGAATA TATATTAAGG TGTGTT

Gene models with high sequence identity

  1. AT2G18570.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 5.9e-30
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
Gene3D no description 5.2e-11
HMMPanther UDP-GLUCOSYLTRANSFERASE 3.2e-88
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 3.2e-88
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 1.8e-23

See the detailed result >

AT2G18570.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT2G18560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-42-D18 introduced

  • F05508 - seed::increased size
  • F10118 - rosette leaf::decreased size / rosette leaf::increased width / stem::abnormal
  • F13029 - Specific phenotypes were NOT observed.
  • F17801 - Specific phenotypes were NOT observed.
  • F21323 - seed::increased size / seed::increased length
  • F30414 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found