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  3. RAFL09-42-H22

RAFL09-42-H22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08352)

full reading [+] show sequence

Nucleotide sequence: RAFL09-42-H22 - full reading 
GATCTCTAAA GCTTTCGTGC TCGCCGATAT AAATCTCTAA TATCGGTCCC 
GTAAGATCGA ATTAGATTCG CGTCGTTTTT TAAGGAACCA AAATAATGGC 
GCAACAATCG TTGTTCTACA GTTTCATCGC TCGCGGCACC GTAATCCTCG 
TCGAGTTCAC AGATTTCAAA GGCAATTTCA CATCTGTCGC TGCTCAGTAC 
CTTGAGAATC TTCCTTCCTC GAACAACAAG TTTACCTACA ACTGCGATGG 
TCATACGTTC AACGACCTCG TCGAAAATGG ATTCACCTAT TGTGTTGTTG 
CAGTTGATTC TGCTGGGAGG GAGATTCCTA TGGCTTTCTT GGAACGCGTG 
AAGGAGGATT TTTATAAGAG ATATGGTGGT GAAAAGGCTG CAACTGATCA 
AGCAAATAGC TTGAATAAAG AATTTGGGTC GAATCTGAAA GAGCACATGC 
AGTATTGCAT GGATCATCCT GATGAGATTA GCAACCTTGC TAAAGCTAAA 
GCTCAAGTGT CTGAAGTTAA AAGTTTAATG ATGGAAAACA TTGAGAAGGT 
TCTTGCCCGT GGTGTGATAT GTGAGATGCT GGGTAGTTCA GAGTCACAGC 
CGCAAGCTTT CTATATAAAA AGAACTCAAA TGAAAAGGAA GAAGTGGTTT 
CAGAACATGA AGATAAAACT CATTGTCCTT GCAATTATCA TTGCCTTGAT 
TCTCATCATC ATCCTCTCGG TTTGTGGGGG ATTCAACTGC GGTAAATAAG 
TCTGGAACAT TTCTTCCCGG CGTTATCGAC TGCGCTCTGT GCTTCCCAAG 
ATCTCTGAGA ATATCTTCAT TCAGTTCGTT GTGCTGCTTT CTTTTTGTGG 
TTTCTAATTT CTAATTTCTG CTATGTCCTT TCTACTTAGG TTGTACATAA 
ATATTATACA TATATGTATG TCCTTTCTTC TTTGAAATTG GTTTTGTATA 
GGCCATATAT ATGTATGAAT GTTTTTGCTA TTACTGGTAC TGACACTGAT 
TCTTGCGAT

Gene models with high sequence identity

  1. AT2G33110.1 [+] show detail - vesicle-associated membrane protein 723
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Synaptobrevin 0.0000000000021
FPrintScan Synaptobrevin 0.0000000000021
superfamily Longin-like 1.4e-27
HMMPanther VAMP-7 1.2e-103
HMMPanther SNARE PROTEINS 1.2e-103
HMMPfam Synaptobrevin 9.1e-20
Gene3D no description 0.00000000095
ProfileScan Longin 25.45
ProfileScan Synaptobrevin 11.987

See the detailed result >

AT2G33110.1

Model type
Protein coding
Short Description
vesicle-associated membrane protein 723
Curator Summary
member of VAMP72 Gene Family
Computational Description
vesicle-associated membrane protein 723 (VAMP723); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: endoplasmic reticulum, membrane; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: synaptobrevin-related protein 1 (TAIR:AT2G33120.1); Has 1518 Blast hits to 1517 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 713; Fungi - 139; Plants - 452; Viruses - 0; Other Eukaryotes - 214 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-42-H22 introduced

  • F19004 - rosette leaf::increased length / rosette leaf::abnormal / cauline leaf::hyponastic
  • F26423 - seed::decreased size

Mutant lines with disrupted or induced

2 mutant lines found