1. Home
  2. Full-length cDNAs
  3. RAFL09-42-N24

RAFL09-42-N24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08364)

full reading [+] show sequence

Nucleotide sequence: RAFL09-42-N24 - full reading 
ACACACTCAC AACTCAAATC ATCTTTTTGT CTCCCTCCTG AAAAAATGGG 
GTTTTCGTCT TCATTATCTT GCAGTGCTAT GGGAGCCCTA ATAGTGGGTT 
GCCTTCTGCT TCAAGCATCA AACTCTAATG CTCAGTTGAG ACCTGACTTC 
TACTTCAGGA CTTGCCCACC TATTTTCAAC ATCATTGGGG ATACCATCGT 
CAATGAGCTG CGGACTGATC CTCGTATTGC CGCGAGCCTC CTTCGGCTTC 
ACTTCCATGA CTGCTTTGTT CGTGGTTGTG ATGCATCGAT CTTGCTTGAC 
AATTCCACAT CATTCCGGAC CGAGAAAGAT GCTGCTCCAA ACAAAAATTC 
GGTTCGAGGG TTCGATGTCA TAGATAGAAT GAAAGCAGCC ATTGAGAGAG 
CTTGCCCAAG AACAGTTTCT TGCGCAGATA TTATCACCAT CGCCTCTCAG 
ATATCAGTTC TTTTGTCTGG CGGTCCATGG TGGCCAGTTC CGTTGGGGAG 
AAGAGACAGC GTAGAAGCTT TCTTCGCTCT GGCTAATACA GCTCTTCCCT 
CTCCATTTTC CACTCTTACT CAACTTAAAA CAGCTTTTGC TGACGTTGGC 
CTAAACCGCC CTTCGGATTT AGTCGCCCTC TCCGGTGGTC ACACATTTGG 
AAAAGCACAA TGCCAATTCG TGACACCTCG TCTTTACAAC TTCAACGGTA 
CCAACAGACC AGACCCAAGT TTGAACCCAA CTTACCTCGT TGAACTCCGT 
CGATTGTGTC CTCAAAACGG AAACGGCACC GTTCTGGTTA ACTTCGATTC 
CGTGACTCCA ACTACTTTCG ATAGACAATA TTACACCAAT CTTCTTAATG 
GGAAAGGTTT GATTCAGAGT GACCAAGTGC TTTTCTCAAC TCCAGGAGCT 
GATACGATTC CACTAGTAAA CCAATACAGC AGCAACACGT TCGTGTTCTT 
TGGAGCATTC GTTGATGCAA TGATTAGGAT GGGAAATCTT AAACCTTTGA 
CTGGAACTCA AGGAGAGATA AGACAGAATT GTAGGGTTGT GAATCCAAGA 
ATTAGGGTTG TGGAGAACGA CGATGGTGTT GTGAGTTCTA TCTGATTATG 
CATGTTGGGG ATATATGGAT ATGTAAGAAC GTATAAAATG TGTGGGATTG 
TGGGAACATT TCGACTAAAT AAAGTTCTCA CAAGTTGTGT GATTTATGAA 
ATTTGGTCTT AATTAACACT T

Gene models with high sequence identity

  1. AT2G38390.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Haem peroxidase, plant/fungal/bacterial 80.629
superfamily Haem peroxidase 2.4e-115
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Plant peroxidase 8.2e-68
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.3e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.3e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.3e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.3e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.3e-33
PatternScan Peroxidases heam-ligand binding site 0
PatternScan Peroxidase, active site 0
Gene3D no description 1.4e-59
HMMPfam Haem peroxidase, plant/fungal/bacterial 2.4e-71

See the detailed result >

AT2G38390.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38380.1); Has 4338 Blast hits to 4309 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 52; Plants - 4237; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-42-N24 introduced

  • F04520 - Specific phenotypes were NOT observed.
  • F18351 - seed::decreased length

Mutant lines with disrupted or induced

3 mutant lines found