1. Home
  2. Full-length cDNAs
  3. RAFL09-43-F09

RAFL09-43-F09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09781)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-F09 - full reading 
AAAAAGAAGT CTTCTTCCAT AGTTACTAGT TAGAGCTGCG AAACGAAAAT 
CGTAACGATA GTGCATCAAT GGCTTATGCG TCACGCATCA TTAATCATTC 
CAAGAAGTTG AAGGATGTTT CCACTTTACT ACGCCGTGAG AATGCTGCAA 
CGATCCGCTA CTACTCGAAT ACTAATCGAG CTCCTCTGAA CAGAGAAGAT 
ACTTTCAATT CCCGTCTTGG TTATCCCCCA CTGGAGAGGA TTTCCATATG 
TAGCACCAGC ACTTTACCGG TGTCCATTAT TTTTTCAACT ACGAGATCAA 
ATCTAAGCAG TGCAATGGGA AGGCCAATAT TTGGAAAAGA ATTTTCATGT 
TTGATGCAAT CAGCTAGAGG ATTTTCATCG GGTTCAGATC TGCCTCCTCA 
TCAAGAGATC GGGATGCCTT CTCTCTCGCC AACAATGACT GAGGGTAACA 
TCGCCAGGTG GCTGAAAAAA GAAGGTGATA AAGTTGCTCC TGGGGAAGTA 
CTCTGTGAAG TTGAAACTGA CAAAGCAACT GTCGAAATGG AATGCATGGA 
AGAGGGCTAT CTCGCCAAGA TTGTAAAGGC GGAAGGTTCA AAAGAAATTC 
AAGTCGGCGA GGTAATTGCT ATTACAGTTG AAGATGAAGA GGACATTGGA 
AAGTTCAAAG ATTACACCCC ATCATCTACT GCTGATGCCG CTCCTACAAA 
AGCAGAACCA ACTCCTGCCC CACCAAAGGA AGAGAAGGTC AAACAGCCAT 
CATCGCCTCC TGAACCGAAG GCCTCCAAGC CTAGCACACC TCCCACAGGA 
GATCGTGTTT TTGCTAGTCC TCTTGCAAGA AAGTTGGCTG AAGATAATAA 
CGTGCCTCTC TCAGACATCG AAGGCACAGG TCCTGAAGGA CGGATAGTGA 
AGGCAGATAT CGATGAGTAT TTAGCTTCAA GTGGTAAAGG AGCTACTGCG 
AAGCCATCTA AGTCAACTGA TTCTAAGGCC CCAGCTTTGG ACTATGTTGA 
CATCCCTCAT TCTCAGATAC GAAAGGTCAC AGCCTCACGT TTGGCATTCT 
CAAAGCAAAC TATCCCTCAC TATTACTTAA CCGTCGATAC ATGTGTTGAC 
AAACTTATGG CTCTGAGGAG TCAGCTTAAT TCATTCAAAG AGGCTTCTGG 
TGGGAAACGG ATATCTGTCA ATGATCTTGT TGTTAAGGCT GCTGCATTAG 
CTCTCAGAAA AGTTCCTCAG TGCAATAGTT CATGGACTGA CGATTACATC 
CGCCAGTTTA AAAATGTGAA CATCAACGTC GCGGTGCAGA CAGAAAACGG 
GCTGTATGTC CCTGTTGTGA AGGACGCAGA CAGGAAGGGT CTGTCCACAA 
TTGGAGAAGA AGTTCGGTTA TTAGCTCAAA AAGCAAAAGA GAGCAGCTTA 
AAGCCAGAAG ATTATGAGGG AGGAACATTT ACTGTCTCTA ACTTGGGAGG 
ACCTTTTGGC ATCAAGCAAT TCTGTGCAGT CGTTAATCCA CCTCAAGCCG 
CCATTCTAGC AGTTGGATCC GCTGAAAAGA GAGTTGTCCC TGGTAACGGT 
CCAGATCAAT TCAACTTTGC TTCTTACATG CCTGTTACAC TGAGCTGTGA 
CCATCGCGTA GTAGACGGTG CCATTGGAGC TGAATGGTTG AAAGCATTTA 
AGGGATACAT CGAGAACCCT AAATCTATGT TACTCTAAAA GAGAACCAAC 
CACGCAATGG AAAAAAACAC ATCAAAAGCT GTCGTAAGAG TCTCTGTACC 
AATTAGATTT TCTTTGTTTT CCTCTGTTTC TTTCGGGTTT TTCTAAAAAA 
GACTTTTGTT GTTTTCTGAA TAAATATGGT GTGAGGGATT CAGCATTTCC 
ACTGTAAACT GGATTTTAGG ATATTCTTTG CTGGTTCTGG TTGTTCAATG 
TTCATTGAGG AGGGCTGTGA AATAAAACTC CCATTATTTT GTCATGTGAA 
GTACTACCCT ATATGGGATG GGTTTTGTAA CCATGCTTGA TAGTTGATAC 
AAGTGGATGG ATTTGAGT

Gene models with high sequence identity

  1. AT1G54220.1 [+] show detail - Dihydrolipoamide acetyltransferase, long form protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMPfam 2-oxoacid dehydrogenase acyltransferase, catalytic domain 7e-78
HMMPfam Biotin/lipoyl attachment 1.2e-19
HMMPfam E3 binding 3.2e-16
ProfileScan Biotin/lipoyl attachment 15.443
HMMPanther DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT 1.4e-296
HMMPanther DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE- 1.4e-296
Gene3D no description 9.3e-32
Gene3D E3 binding 0.00000048
Gene3D no description 5.7e-73
HMMTigr Dihydrolipoamide acetyltransferase, long form 2.1e-210
superfamily CoA-dependent acyltransferases 1.7e-79
superfamily Single hybrid motif 5.4e-30
superfamily E3 binding 0.00000000000055
PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0

See the detailed result >

AT1G54220.1

Model type
Protein coding
Short Description
Dihydrolipoamide acetyltransferase, long form protein
Computational Description
Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process, acetyl-CoA biosynthetic process from pyruvate; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT3G13930.1); Has 21519 Blast hits to 19723 proteins in 2310 species: Archae - 104; Bacteria - 12081; Metazoa - 737; Fungi - 478; Plants - 377; Viruses - 0; Other Eukaryotes - 7742 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-F09 introduced

  • F06042 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / seed::present in fewer numbers in organism / stem::abnormal
  • F08939 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found