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  3. RAFL09-43-G22

RAFL09-43-G22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08373)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-G22 - full reading 
TCCCCCCCCG TCCGGTTTCC CAATTTTCTT CACGCTTCTC CCATACCCTC 
TTACCTATCT TCTTATTCTT CTTAGATTTC TCCATCGATC TCGAACAAAG 
GATTCACCTT TGCATTCATA TTCTTTATCT TGACTTCAAA GTCAAACCTC 
CGATTCGATA AACAAATTGG GGAATGGATG CTTGCTTTCG TCTTTCTCAC 
CAGATCTGAA GCACCCAAGT TCCAAATTCA TATTCGATTC ACCGGCGGCT 
AGGTATTTCT CAAATCGGTC AGATTTCTGA GATTTATTTA TGAGAACAAT 
GGTGACGACC AAATTGGGAA TGCTCCATTA TGTAATTGAC CATATATATG 
GAGCGTTTAT GCACCGCACC AAGATGACCC CACCCTTCTT CTCTCGAGGT 
TGGGGTGGTC CCAATCTCGA ATTGCTCGAG CGTATGGTTC AACGCCTCTT 
CCCTCTTGAG GTTCAAGGTC AGAATTGGCC ACCGCCTCTG GTTCGTCCAG 
TCTGGAGAAC TGTTTGGGAG ACAAAGACCG CTACTTTGAG AGAAGGTGTT 
TTCCAGACTC CTTGTGCCGA TGAGCTTACC GCTGCTTTGC CTCCGGAGTC 
TCGCACAGCC AGGGTTGCTT GGCTTGTCCC CAAAAACGTT CCTCCCCAAA 
AGATGGCTTG TGTGGTTCAT CTTGCAGGCA CAGGTGATCA TACATATGAC 
CGAAGATTGC GTTTGGGTGG ACCGTTGGTG AAACAAAACA TTGCAACAAT 
GGTGTTGGAA AGCCCTTTCT ATGGCCAAAG GCGTCCCTTT CTTCAATGCG 
GTGCGAGACT CCTCTGTGTT AGTGATCTAC TTTTGCTAGG GAGGGCAACA 
ATCGAAGAGT CCCGCAGTCT TATTCACTGG CTAGACACTG AGGAAGGCTT 
TGGAAAGATG GGTGTTTGTG GGCTAAGTAT GGGAGGAGTA CATGCTTCGA 
TGGTTGGATC GCTTCATCCA ACACCAGTTG CAACACTTCC ATTCCTATCT 
CCGCACTCTG CTGTTGTTGC ATTCTGCGAA GGAATATTAA AGTATGGGAC 
TGCTTGGGAG GCACTGAGGG AGGAACTTGC AGCACAGAAG ATCACAATGA 
CTCTTGATGA AGTGAGAGAG CGGATGCGGA ATGTTCTCTC CCTCACAGAC 
GTCACTCGCT TCCCTATTCC CAAAAACCCT GATGCTGTTA TCTTTGTTGC 
TGCAACTGAT GATGGATACA TACCAAAACA CTCAGTGTTG GAGCTTCAAA 
AGGCGTGGCC TGGTTCAGAA GTGAGATGGG TCACAGGTGG ACACGTGTCT 
TCCTTTATAC TTCACAATGA TGAGTTTCGC AGAGCAATCG TGGACGGTCT 
CGATAGATTA GACTGGAAGG AGTCATGGTG AGGTATAACA TGCGTAACAC 
AGCCCCTTTT TAACACAAAG GGAGGGGTCA TTATGTAAAT GTCTTAATCT 
CCTCTTGTTG TATCATTTGT GTATGTTAGG AATAAGATTC TTTGCGCTTT 
CAAAAGTGGT GGGCTCTGAT ATTTATTTGT CTTGTGTTGT TTTTGTCCCA 
ACACATAGCA ACCATTTTAG GGGTTTTCGC TCATTACATT CCATTAATAT 
GTCATATACA TTGGATCTTT AACATTGTTT TTCTTTGCGC TCT

Gene models with high sequence identity

  1. AT3G12150.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 2.3e-07
HMMPfam Protein of unknown function DUF2048 7.3e-118
superfamily alpha/beta-Hydrolases 5.8e-19
HMMPanther SUBFAMILY NOT NAMED 0
HMMPanther FAMILY NOT NAMED 0

See the detailed result >

AT3G12150.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-G22 introduced

  • F10442 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found