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  3. RAFL09-43-H09

RAFL09-43-H09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda13183)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-H09 - full reading 
AGAGCGTTCA GATTTCTCTT CAACATAATC ATGGCATTGA CCTTCTTCTT 
CTTGTTATCG AATTTGTTCT TCTCCGGTAA GAATCTGCCT GATCTCACAT 
ATTTAAAGAC TCTAATTATT TTTAAATTTC TTCATTTTTT TCAATCTTAG 
GAGTTATGTC AAGGAGCTTC ACATTTTCAA ACAAATGCGA TTACACAGTG 
TGGCCGGGAA TTCTATCTAA CGCCGGAGTT TCTCCATTAC CAACCACCGG 
CTTCGTCCTC CTGAAAGGCG AGACGCGTAC AATCAACGCA CCGTCATCAT 
GGGGGGGTCG TTTCTGGGGA AGAACACTCT GCTCAACCGA TTCCGATGGA 
AAATTCTCGT GTGCCACCGG AGATTGCGGC TCCGGAAAAA TCGAATGCTC 
CGGCGCTGGA GCTGCTCCTC CTGCGACTTT AGCTGAATTC ACTCTCGATG 
GCTCCGGAGG ACTCGATTTC TACGATGTCA GTCTCGTCGA CGGCTACAAT 
GTCCAGATGC TGGTGGTTCC TCAAGGCGGC TCCGGTCAGA ATTGCAGCAG 
CACCGGCTGC GTCGTCGATT TAAACGGATC TTGCCCGTCG GAGCTAAGGG 
TGAATAGCGT CGACGGGAAG GAGGCGGTGG CGATGGCGTG TAAAAGTGCG 
TGCGAGGCGT TTCGGCAGCC GGAGTATTGC TGCAGCGGCG CGTTTGGATC 
GCCTGACACG TGTAAGCCGT CTACGTACTC GCGGATCTTC AAGAGCGCGT 
GTCCACGCGC CTATAGCTAC GCGTATGACG ATAAGTCTAG TACATTTACG 
TGCGCGAAAT CTCCCAACTA CGTCATCACT TTCTGTCCTT CTCCCAACAC 
CAGCCTAAAA TCAGCTGAGG AACACAGCAC AGAGACAATG ACGACGACAA 
GTCCAAGTTC CGGCAGTACG ACGTCGTCGC AGATGGTCTA CGAAGGTGCT 
CTGGACGAAA GCAGTGGTTC ACCATCTACG TATCACGGCG TATCACGAGC 
AATCACAGTC GTTCTTCTCT CGCTTGCTTT TTGTCGTATG TGGTGGTTCT 
TCTGACCAGA GATTATTTGT CTTAGTGTCT GCCACGTATG CGCAGAAACA 
AGAACGTATG GGCCTTTAGA AGGCCTTTTC TCACTATAGT AAAAATATTT 
CTAAAGTTTT TCCACATAAT GTCAACTTTT TACTCCACAT GACCAAACGT 
TGAATGATTA AACCATTCTT AAGGAAAATC AAGAAAGTAG GCTATATTAA 
AGCATTAATA TTGGTAGTAT TTTAGATTAG TCTTAAGTCT AAACATAGTT 
TTTAGGAATA ATTTTATAAT TAATTTTAAA AATTTTGATG TTAAAAAACT 
AAAATTTTGG CAATATACAA TGGTGGTTTT

Gene models with high sequence identity

  1. AT1G20030.1 [+] show detail - Pathogenesis-related thaumatin superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Thaumatin, conserved site 0
ProfileScan Thaumatin, pathogenesis-related 45.601
FPrintScan Thaumatin, pathogenesis-related 5.8e-14
FPrintScan Thaumatin, pathogenesis-related 5.8e-14
FPrintScan Thaumatin, pathogenesis-related 5.8e-14
FPrintScan Thaumatin, pathogenesis-related 5.8e-14
superfamily Thaumatin, pathogenesis-related 2.7e-127
HMMPfam Thaumatin, pathogenesis-related 1.7e-91
HMMSmart Thaumatin, pathogenesis-related 5.4e-122
Gene3D Thaumatin, pathogenesis-related 4.4e-77

See the detailed result >

AT1G20030.1

Model type
Protein coding
Short Description
Pathogenesis-related thaumatin superfamily protein
Computational Description
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75800.1); Has 1614 Blast hits to 1596 proteins in 182 species: Archae - 0; Bacteria - 45; Metazoa - 56; Fungi - 77; Plants - 1416; Viruses - 2; Other Eukaryotes - 18 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-H09 introduced

  • F03632 - Specific phenotypes were NOT observed.
  • F20517 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found