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  3. RAFL09-43-J02

RAFL09-43-J02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17727)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-J02 - full reading
GCAAGCATCG TCAGGCTCTT CCCTCTTCTT TCTCGTGCTA CTTCCGAGAG 
AATTCGATCA TACAAAACTT CAAATTTTAG GATTAGGGTT CCATCGTTCT
CCGTGATTTT GAGGACATGT CAGGGAAACG GGTCATAGCA ATATGTATGT
CTGGTGGGGA GTTCCAGACA GAGAAAGGCG GGTCGCTGTC TTACAAAGGC
GGCGATGCTC ACGCGATAGA TGTGGACGAG CAGATGAAAT TCATAGACTT
TATCTCAGAA ATTGGTGAGA TGTTTAATTG CGATGTCAGG ACAGTTTCTC
TAAAATACTT TCTCCCGGAT AACAAGAAAA CGCTCATCTC CATATCTAAC
GATAAAGATT TGAAACGGAT GATCAAATTT CATGAGAACT CCAACACTGC
TGATGTCTAT CTCTTACCCG AAGAAGCTAC TCCCGACATT TCAAACATGC
CAGCTAGCAG ATCAAGCAGA ACAACGTTGT CTGAAGCGAT TCCCCCGGTT
CCTATGGACG ACATGATTGA CGACACAATG GGACCAGAAG AGCTTCCCAT
CTCAATCTCA GTCTCAGCTC CTCCCGCTGT GACTATGGAG GAAGTCATGA
ACCGAGCTGA AGATGCACAG ATTATTATTA ATCCATCCGA ATTGATGTCA
TCGATTGTTG AAGTCCCGAA TCCGAAAGGA GATATTCTCA CAAAGGCAAG
AACACAGCAG TGGCAGAACA CAATCACAGG AGTGGGTCAA CGGTTTAAAA
ATGTTGGGGA GTTTTCGTGA AGCGCTACGG AAATACGCCA TAGCAAATCA
GTTTGGATTC CGCTACAAAA AGAACGATAG CCACCGAGTG ACAGTTAAAT
GTAAAGCCGA AGGTTGCCCT TGGAGGATCC ATGCTTCAAG GCTATCAACA
ACTCAGCTGA TCTGTATTAA GAAAATGAAT CCGACACATA CTTGTGAAGG
TGCGGGTGGA ATTAATGGGC TTCAGACGAG TAGAAGCTGG GTTGCTAGCA
TTATTAAGGA GAAGCTGAAA GTCTTTCCTA ACTATAAACC GAAAGACATT
GTCAGCGACA TCAAGGAAGA GTATGGGATT CAGCTGAATT ACTTTCAGGC
ATGGCGTGGT AAAGAAATTG CAAGAGAGCA GCTTCAAGGA TCTTACAAGG
ACGGTTACAA ACAGCTTCCG CTGTTCTGCG AGAAGATAAT GGAAACTAAT
CCGGGCAGTC TCGCTACATT CACAACGAAG GAAGATTCAA GTTTTCACCG
TGTTTTTGTT TCGTTTCACG CCTCGGTTCA TGGTTTTCTC GAGGCTTGTC
GACCACTTGT GTTTCTCGAC AGTATGCAGT TGAAATCAAA GTATCAGGGG
ACCTTATTAG CTGCGACTTC TGTGGATGGG GACGACGAAG TGTTTCCTCT
GGCTTTTGCA GTGGTCGATG CGGAGACGGA TGATAACTGG GAATGGTTCT
TGCTTCAGCT GAGATCTCTG CTGTCCACGC CTTGCTATAT AACTTTCGTT
GCTGATCGAC AGAAGAATCT GCAGGAATCG ATCCCAAAAG TGTTTGAGAA
GTCGTTTCAC GCGTATTGTT TGCGGTATTT GACTGACGAG CTCATCAAAG
ACTTGAAAGG ACCATTCTCT CATGAGATCA AGCGGTTAAT CGTTGACGAC
TTTTACTCTG CAGCTTACGC TCCCAGAGCA GATTCATTCG AGAGGCATGT
TGAGAACATC AAAGGCCTCT CACCTGAAGC TTATGATTGG ATTGTGCAAA
AAAGCCAGCC TGATCATTGG GCCAACGCTT ACTTCCGTGG TGCTAGGTAC
AACCACATGA CTTCACACTC AGGCGAACCG TTCTTTAGCT GGGCTTCCGA
CGCCAACGAT CTACCAATAA CTCAAATGGT TGATGTGATC CGTGGAAAAA
TAATGGGATT GATCCATGTG AGACGGATTA GTGCCAACGA AGCCAATGGA
AATTTGACTC CCTCCATGGA AGTAAAGCTA GAGAAGGAGA GTCTAAGAGC
GCAAACGGTT CACGTAGCAC CATCAGCAGA TAACAACTTG TTCCAAGTCC
GTGGAGAGAC GTATGAGCTC GTGAACATGG CTGAGTGTGA CTGTAGCTGC
AAAGGGTGGC AGTTAACAGG TTTGCCGTGT CACCACGCAG TAGCGGTTAT
AAACTATTAC GGACGTAATC CGTATGATTA CTGTTCGAAA TATTTTACTG
TTGCGTACTA CAGGTCAACG TATGCGCAGT CGATAAATCC GGTTCCACTT
TCTTTTTTTT TGTTTATTAA CTTATTTTTC TTTTCAACTT TCTGTCAACA
TTTTTAAAGT GATCAATCTG TAAGAAAGAT TTTTTTTTTA CGTTAAACAT
TTCCCTTATG GGATTTTTAG TTCAAAAAAA AAA

Gene models with high sequence identity

  1. AT3G05850.1 [+] show detail - transposable element gene
    E-value: 0; Score: 99.96

 

InterPro Scan Digest

Program Description E-value
HMMPfam Transposase, MuDR, plant 8e-20
HMMPfam MULE transposase, conserved domain 1.2e-17
HMMPfam Zinc finger, SWIM-type 0.0000000025
HMMPfam Octicosapeptide/Phox/Bem1p 0.0000000000000015
ProfileScan Zinc finger, SWIM-type 10.324
HMMSmart Zinc finger, PMZ-type 0.000000000052
HMMSmart Octicosapeptide/Phox/Bem1p 3.8e-19

See the detailed result >

AT3G05850.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
Mutator-like transposase family, has a 1.9e-58 P-value blast match to GB:AAA21566 mudrA of transposon="MuDR" (MuDr-element) (Zea mays)
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-J02 introduced

  • F01626 - seed::decreased size
  • F10702 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found