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  3. RAFL09-43-L08

RAFL09-43-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08380)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-L08 - full reading 
AAAAAGAAAA ACATTCGACA TTACAGAAAA GAAAAAACTA TAAGAAAATC 
TTAATTAATA AAATAATATA TTCAGGAGGG CGAGAGAGAG AGAGAGGGAT 
GATGAAGGAA GAACAATGGG CACCAGTGAT AGTAATGTTA ATATCAAGTG 
TTGCAATGGG ATCAGTGAAC GCTCTCGTTA AGAAAGCACT TGATGTTGGT 
GTTAACCATA TGATCTTTGG TGCTTATAGA ATGGCTATTT CTGCTCTAAT 
CTTGGTTCCG TTTTCTTATA TTTGGGAGAG GAAAACAAGG CCACAACTAA 
CGTTCATGCT TTTGTGCGAA CATTTCATCA GCGGATTACT TGGGGCAAGT 
TTGATGCAAT TTTTCTTTTT ACTTGGGCTT TCGTACACGT CAGCAACTGT 
TTCGATGGCT CTAGTTAGCA TGTTACCTGC TATCACCTTT GCGTTAGCCC 
TTATTTTCCG GATAGAGAAT GCGCAAAACC TAAAGAGCAA AGCAGGCGTG 
CTCAAAGTAA TGGGAACCCT AATTTGCATA ATGGGAGCAA TGTTGTTGAC 
ATTTTACAAA GGCCCAGAGT TATCAAACCC TCATTCTCAT CCACAAGCTC 
GTCACAACAA CAACAATAAC AATGGTCACG ACCAAACAAA GAAATGGCTT 
CTAGGCTGTC TTTATTTAGT CATTGGGACA GTGTTGTTGT CTCTATGGAT 
GTTGTTTCAA GGGAAATTAA GCTTTAAGTA TCCTGGAAAT AAATACTCAA 
GCACTTGTCT CATGTCAGTC TTCGCATCAT TTCAATGTGC TATTTTGAGT 
CTTTATAAAA GTAGAGACGT CAAAGATTGG ATCATTGAAG ATAAATTCGT 
CATTTTGGTC ACCCTTTACG CTGGAATAGT GGGACAAGCG ATGTCGACAG 
TGGTAACGTC ATGGTCCATA AAAATGACAG GAGCAGTTTT CGTCTCAACA 
TTCAGCCCCG TCAGCCTCGT CGCCGCTACG TTATTCGATT TCCTCATCTT 
ACACTCTCCT TTATACCTTG GCAGCATACT TGGATCAGTA GTGACTATAA 
CTGGCCTCTA CGTTTTTCTT TGGGGAAGGA AGAATGAGAC AGATCAGTCT 
GTTTCGAAGA CTTTGAACAG TTCCCAGTTT TCTCAGAATA AGGATAACGA 
AGACCATACA ATAGCAAATC ATAAGGATAC TAATTTGCCC GTTTGATATA 
TATATATATC ATATTTATAG AGGTAGCTAG ATATTTGCTA TCATAATCGT 
GATAGTACTG TCATTGATCA GCTCTATATT ATAAGACTTA TGTTCTTCTG 
TATTGCCAAC TATAGCTCAC TGTATGTTTG TAACCAGTTG GATTGGTTTA 
ATTGGAAATA AAAGTAGTTG GAGATGTA

Gene models with high sequence identity

  1. AT4G01430.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF6, transmembrane 6.1e-09
HMMPfam Protein of unknown function DUF6, transmembrane 2.6e-07
superfamily Multidrug resistance efflux transporter EmrE 1.3e-10
superfamily Multidrug resistance efflux transporter EmrE 2.4e-07

See the detailed result >

AT4G01430.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G01070.1); Has 2489 Blast hits to 2481 proteins in 402 species: Archae - 14; Bacteria - 1085; Metazoa - 6; Fungi - 8; Plants - 1212; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-L08 introduced

  • F16603 - stem::decreased thickness / fruit::decreased length / stem::present in greater numbers in organism / stem::abnormal / stem::abnormal
  • F23250 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found