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  3. RAFL09-43-L12

RAFL09-43-L12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08381)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-L12 - full reading 
AGAACTTCCA AATTGTAAAA CTTCGGCTCC CACAGGGGAA ACAAAGCGAC 
CGTTTTGCTC ATCATTATTT ATAGCCGCCG GCGAATTGAT CGGTAAAAAA 
AAAAACTTCC GACGTTTCTA CAAAGTTGCG AATCATGATC TACCTCTCTA 
GACGCTCACT CTCTTCTCTT CTCCGATCCG GTTTCAATCT CCGCGGCGAT 
CTTACAGCAG CAGCTGTCTC TTGTTCCTCT CTCTTCTCCG ACGCGGACGG 
TGGGATTAAG AAGTTACACT CGCGAGCTGG GAATGCAGTG TTATGGAGAA 
ATAGTCAGCT ATGTAGTTCT CAAGGAAGCT TTTTTGGACG AGGAGGACAA 
GTCTCAGGTT CTGTGTTTCG ATGTTTCTGC AGTGGTAGTG ATACTTCTCC 
TCCTAGCTTG GATCGGAAGT TTTTGGCTCA GCTATGGGTT GCAGATAAGA 
AAAAGCTAAA GGCTATGGAA AAGCGATATA AGAAAGCTTC TAAGCATAGG 
AACTACACTG AAAATGATGG ATTTGATGTC CATTTTGAAA CTGTTGAGCC 
TACAGTGGAG CAACCACCGG TTAGCCAGTC TATGTCTGGT CTTCTGAAGC 
CTAAAACTTC TGATGAGGCC AAAATTGCAA CTCTGCTTGC ACGATCGAAT 
TTGCTGGTTA CAAGAGATAT TGAATGGGCA AATCTGGTTC TTGGTTTTGA 
ACAGGAAAAT CGCTATATTG TAGTAGATGT TTGCTATCCT GAGGCACCTG 
TGGGGTCTAT CCGAGAACAA AGCAATTTAC TGGCGCGGCA GCTGCTTCGT 
ACCCGGCGCC CATTTGTTGC TTCCATAACT GATGCTTTGG GTAATGAGCT 
TTTCCGGGTT CGTCGACCTT TCTGGTGGCT CACAAGTTCA ATATATGCTG 
AAATTGATGG AGAGGAAATT GGTGTTGTTC ATCGACGATG GCATCTATGG 
AGAAGAATTT ATGATTTATA CCTGGGGAAC AACCAGTTTG CAGTGGTAGA 
AAATCCTGGG TTTTGGAATT GGACATTTAC AGTGAAGGAT GCTGATGGGG 
AAGTCTTAGC CCAAATAGAT CGTGATTGGA GAGGTTTTGG CTTTGAGATA 
TTCACAGATG CTGGGCAGTA CGTGATCCGA TTTGGAAAAG CTGATGCTGC 
AGCCAAGACC GGCCCTGCGA CACTGGTAGA AGAGTTAGAA GTGAAACGGC 
CATTGACTTT GTCAGAAAGA GCTGTTGTCC TTACGCTTGC GATTTCACTA 
GATAATGATT ACTTTTCAAG ACATGGTGGC TGGGGAATCC CATTCATGGC 
GGTGGGTGAG TAGTAGGTAG GATTCAGTTT TTCACACTCT CTGTTTCGGG 
TAATGACTTG TGTGGCTATC TGAAAACTTG AGCCTTGTGT TGTGTTTCTC 
TGTCTCGTTT CAACTCATAC GAGTATGCAG AGTAAATGTA ACTTTAAATC 
ATTCGACATA AATCGGTTTA TATAATGATG ATTATTGTGG AT

Gene models with high sequence identity

  1. AT2G04940.1 [+] show detail - scramblase-related
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Scramblase 1.1e-69
HMMPanther UNCHARACTERIZED 2.1e-223
HMMPanther Scramblase 2.1e-223

See the detailed result >

AT2G04940.1

Model type
Protein coding
Short Description
scramblase-related
Computational Description
scramblase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Scramblase (InterPro:IPR005552); Has 427 Blast hits to 416 proteins in 142 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 113; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-L12 introduced

  • F13715 - Specific phenotypes were NOT observed.
  • F18749 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found