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  3. RAFL09-43-M05

RAFL09-43-M05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08385)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-M05 - full reading 
TGGCATCGCC TGTTTTTATA ATTTCTCGTC TTGTACAAAA TAAAAGACTC 
TCTCTCTCTT AAAATTTCTC TTTCGATTCT CTCGCATTTC AAAATTTCAT 
TTCCTTATAT AGACTCTTAA GGCCGGCGAT TTCTGTGAGT CCATAGATTT 
TCGCTACTCC GCCGTCAGTT TTTCTCAACT CCGGAGGCTG TGTTTTTGCC 
ACCGCTTTGA TTCGCCGGTA AGTTCACGTA TGGCCAGTAA TACTTTGAAA 
GAGATGAATA GTCTTCATGT AACTGAGAAG ATAAGTGACT GTAAAGCTAG 
CTTGACCAAG CCATGTGTTG GTAAAATGAA TGGAAAATCT GAAGATAGAC 
CATTACCAAA CTCTGCCTCC TTGGATTCCA GTGATTCTAA AGTTGTAGAA 
GCAGAGAAAC CCGAGCCAGA GATAGCTATT GTGGAAGTTG AATATATTGA 
ATCTGAAAAC TTGGATAATG TAGACGATGC TGATGCAGTT CTGAAGTCTG 
TTTTAGCTGG ACTAGAGTCC AAGGACTGGA TTTCACTCTG TGATGCTCTT 
AATAACGTTC GCCGACTTTC GATATTCCAC AAGGAAGAAA TGATGCATAT 
GCTTGAAAAA GTGATACCAC TTGTCGTGAA ATCACTGAAA AATCCAAGAA 
GTGCGGTGTG TAAAACGGCA TGCATGACAT CTGCAGATAT CTTCAGTGCA 
TATAATAATC ATATAACAGA TCTGTTGGAG CCTCTGCTTA CTCAACTACT 
CCTCAAGTCT TCCCAAGACA AACGGTTTGT TTGCGAGGCA GCAGAGAAAG 
CTTTAACAGC AATGACCAAA TATGTTTCCC CAACCTTGCT GTTACCAAAG 
CTGCAACCTT GTCTCAAAAA CAGGAATCCT CGGATCCGTG CCAAAGCATC 
ATTATGCTTT TCTCGAAGTG TTCCTCGACT GGGCGTTGAA GGGATTAAAG 
AATATGGAAT CGACAAATTA GTTCAAGCAG CCGCATCTCA GCTTAGCGAT 
CAGCTCCCTG AATCCCGTGA GGCTGCACGG ACTGTCCTAC TAGAACTTCA 
GAGCGTATAT GAAAAAGCTC ATCCTCTCAT CAACCCTGAG ACATCATCAC 
CAGAAGAACA GCAAATCCCG GAGGTAGAGC CAATTACTTG GGAAACTTTC 
TGCAAGTCAA AACTGTCGGC TCTTAGCGCA CAAGCCGTGC TTCGTGTCAC 
CAATGTTGTC ACTGTTACTG CTCGGGAGGG TTTGGTTACT ACAGGTTCAT 
CATCTTCATC CCAGTTATAA ACATTTTCTA CTACAAATTT TTTAAAAACC 
GTTTGCTACG AGTCATACGG TTTACATGGT ATTCTCCGGC ATGGCGGCAT 
GATCTACCAA ATTGGCAAAT TATGGACCGA TAAAAAGAGT GAACGTTCGT 
GTATGAAAAA TCTTGGCTTC TTTCTGGGTT ATTTTCTTTT TGTGGATTCT 
CATCTGTCTT CACTACCAGT ACTTGTTTCT TTTTCTTATG TGTATATATT 
CTATACCAAG ATTTGGTAAG ATAGTCATGA GTCTTTTGGT

Gene models with high sequence identity

  1. AT5G14790.1 [+] show detail - ARM repeat superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Armadillo-type fold 4.4e-22
HMMPfam CLASP_N 7.7e-13
HMMPanther CLASP 1.2e-67

See the detailed result >

AT5G14790.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01450.1); Has 322 Blast hits to 322 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 10; Plants - 125; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-M05 introduced

  • F12212 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found