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RAFL09-43-M13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08386)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-M13 - full reading 
GAGCAGATAT TTACCCAATC AGGGATTCAG GAAGAGAAGC AGAGAAAGAA 
ATGGAGATAA CACTGAACAG TGGCTTCAAG ATGCCGATCG TCGGCTTAGG 
AGTATGGAGA ATGGAGAAGG AAGGGATTCG AGACCTTATC CTCAATGCCA 
TCAAGATCGG CTATCGCCAT CTCGACTGTG CTGCTGATTA TAGGAATGAG 
ACCGAAGTTG GTGATGCTCT TACAGAAGCA TTCAAGACTG GTCTGGTTAA 
GAGGGAGGAT CTCTTCATTA CAACCAAGCT ATGGAATTCA GACCATGGCC 
ATGTCATTGA GGCCTGCAAA GACAGTCTCA AGAAACTTCA ACTTGATTAC 
CTCGATCTCT TCCTCGTTCA TTTTCCCGTA GCAACGAAAC ACACCGGAGT 
AGGGACAACC GATAGTGCTT TGGGCGATGA CGGGGTATTG GACATAGACA 
CGACCATCTC TCTGGAAACT ACATGGCACG ACATGGAAAA GCTTGTTTCT 
ATGGGTTTAG TCCGCAGCAT TGGAATCAGT AACTATGATG TCTTTCTAAC 
GAGAGATTGC TTGGCTTACT CCAAGATCAA ACCTGCTGTG AATCAGATCG 
AGACACATCC TTACTTCCAA CGTGATTCTC TTGTCAAATT CTGCCAGAAA 
CATGGTATCT GTGTCACTGC TCATACTCCT CTCGGAGGTG CCACAGCCAA 
TGCCGAGTGG TTTGGCACCG TGTCATGCCT GGATGATCCA GTTCTCAAAG 
ATGTGGCCGA GAAGTACAAA AAGACAGTGG CACAAGTTGT CCTGAGGTGG 
GGAATCCAGA GAAAAACGGT GGTGATACCA AAGACATCAA AGCCTGCGAG 
ATTGGAAGAG AACTTTCAGG TTTTCGACTT CGAACTATCG AAAGAGGACA 
TGGAAGTGAT CAAAAGCATG GAGAGGAAAT ACCGCACGAA CCAACCAGCC 
AAGTTTTGGA ACATTGATCT CTACGCTTGA TCACACTCTC TCTATCTACA 
TGAATAAATG AAGCTTAAGA AGATAAACAA CGAGAAGAAG CCATAGCTTT 
ACCTGAAACA TTCTCAAATG TTTGTGAGCC TATCTTTCAT ACATAAACTC 
ATGTTGTTAA ACAGATTATG ATTTCTTAAG TACTACAATA TCACACATTG 
ATGGAAAGT

Gene models with high sequence identity

  1. AT2G21250.1 [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Aldo/keto reductase 1.8e-95
HMMPfam Aldo/keto reductase 1.2e-54
FPrintScan Aldo/keto reductase subgroup 3.6e-55
FPrintScan Aldo/keto reductase subgroup 3.6e-55
FPrintScan Aldo/keto reductase subgroup 3.6e-55
FPrintScan Aldo/keto reductase subgroup 3.6e-55
FPrintScan Aldo/keto reductase subgroup 3.6e-55
HMMPanther ALDO-KETO REDUCTASE 1.9e-103
HMMPanther Aldo/keto reductase 1.9e-103
PatternScan Aldo/keto reductase, conserved site 0
PatternScan Aldo/keto reductase, conserved site 0
PatternScan Aldo/keto reductase, conserved site 0
Gene3D Aldo/keto reductase 4.2e-99

See the detailed result >

AT2G21250.1

Model type
Protein coding
Short Description
NAD(P)-linked oxidoreductase superfamily protein
Computational Description
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: cultured cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT2G21260.1); Has 23237 Blast hits to 23200 proteins in 2399 species: Archae - 409; Bacteria - 15760; Metazoa - 2015; Fungi - 1895; Plants - 1372; Viruses - 0; Other Eukaryotes - 1786 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-M13 introduced

  • F21223 - seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found