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  3. RAFL09-43-N08

RAFL09-43-N08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17729)

full reading [+] show sequence

Nucleotide sequence: RAFL09-43-N08 - full reading 
GAAACCAAAA AAAAAAACTA ACTTTTTGGG ACTCCAGAAC TAATAATGGA 
TCCCATAAAA CACATCTCTT TACCAGTTCT TGTCTTGTTT CTACTATTAT 
CCGTGTCGGC GGGTCAACCC GGAACCCCGG ACCAGAGACA TGACCCGTAT 
GCTTACAGCG GCAGTCTAAG TCCAGCCATG GCTGTTGTCG TTGTAGTTGT 
CATCGCAGCT CTCTTCTTCA TGGGCTTCTT CACCGTCTAT ATACGTCACT 
GTACTGGCGC AGTAGACGGT AGCGTTACTC CTGCAGGAGG AGCTAGGAGG 
AGAGTGACGA ACGCAACGGT TGCGCGTGGG TTAGACGCGG AGACGATCGA 
GACGTTTCCG ACTTTTGTTT ACTCAGAAGT GAAGACACAG AAGATTGGTA 
AAGGAGCGTT GGAGTGTGCG ATTTGTTTGA ATGAGTTTGA AGACGATGAA 
ACGCTGCGTC TGTTGCCTAA ATGTGATCAC GTGTTTCATC CTCATTGTAT 
CGGCGCGTGG CTTCAAGGTC ACGTGACTTG TCCGGTTTGT CGGACTAATC 
TTGCTGAACA GACGCCTGAA CCGGAAGTGG TGGTGGAAAC CGATCTTGAG 
GCGCAGCAGC AATCGGCGGT TCCTGTACCG GTGGTGGAAC TTCCACGTGT 
TAAATTCCCG AGGTCGCATA CGACAGGGCA TTCGGTGGTT TTACCGGGAG 
AGAGTACCGA CCGGTTTACG CTTAGAGTAC CGGAAGAATT AAGGAAGAAG 
ATAATGGCGA ATTGGAAATT GAACCGGTCG AATAGTGTTT TTGTTTTACC 
GAGAGGAGGA AGCTCGAGGA GTGGTAAACA GGTTGACCGG TCGAGGGCTA 
AATCGGACCG GTGGTTGTTC CGTAAAACTC CGTCGTTTCT ATGGAGGAAC 
CGGGATGATG GTTCGATTAG GCTAGGTGGT ACCGGTAGTG TTAGAGGAAA 
TTCAGTAACA AGTCCGAGCG GTGACTCGGT ACGAGCAGAC CGGTGGGCTT 
TTCTTAGAAA CCCATCGTTT CTCTGGAGGA ATACGACGCC GGTTCCTTCG 
CCGAGAGTTG AAGTCAATAA TAAGGACGGT GAAGGAACAT CGTCAGTTCA 
ACATATCGGT ACAGTTGGTT CAACTAGCGG TTCCCTTAGG CTACCGGTTT 
AGTGTTCGGT GATGTTTTGT GCATTGTTCA TAAACACGCA ATAGATTTTA 
CGTAATTCTT TAATTTTGTT TGTCTTTTTC TGTAAGATAT TTAAATCGAC 
AATCCAACGG AAAAAGGAGA TTGTTTTACT TAATTTATTT TATACTCTTC 
AAAAGTCAAA CAAAGAACGA ACTGGAGATT GGTCTTGTTC TCAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT5G27420.1 [+] show detail - carbon/nitrogen insensitive 1
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, RING-type 0.000003
ProfileScan Zinc finger, RING-type 12.652
superfamily RING/U-box 1.5e-17
Gene3D no description 0.000000000000002
HMMPfam Zinc finger, C3HC4 RING-type 0.000000044
HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 0.0000000000000017

See the detailed result >

AT5G27420.1

Model type
Protein coding
Short Description
carbon/nitrogen insensitive 1
Curator Summary
Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings.
Computational Description
carbon/nitrogen insensitive 1 (CNI1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-43-N08 introduced

  • F07610 - Specific phenotypes were NOT observed.
  • F07631 - seed::decreased length
  • F30244 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found