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RAFL09-44-A13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17730)

full reading [+] show sequence

Nucleotide sequence: RAFL09-44-A13 - full reading 
GAAGATTGTC CTTAAATACC TTTATTCTGT ATTATTTTAT TTTTGTTGTT 
TTGTAGACCT ATACTATGAT TCTCTTTATT TTACGAGAAA GTAAGTAAAG 
GTGATGAGAA CATACCAATC CACCGGTGAC GTATTTAAGG AGGAAACAAG 
CGGCGGTGGA GCCGAGAAGC TGAGCGATCC AGTAGAAAAC TCCGGTGATG 
ACTGTGATTT GACCACCGAC AGCAAGACCA AAAGTGACGG CTGGGTTCAC 
ATGGCCACCG GAGATGTTGG CTCCGATTGC AACGGCCACG AAGAGAGCAA 
AACCATGACA AACCGCGATG GCCACTAGTC CCGGTGTATC AAGAGCAGCG 
TCCGACGTCA GCTTTGCTAT ATACACAAAT GTGACACATT CATTAAGTAT 
TGAACCCATT AATTTTTACA AATTACGAAA ATTATTTAGA TCCCATTATT 
TAACTACGAG TATACGAACC GTAGGCAATG GCAGAGCCAA CACCAGCGAA 
AACAAAGAGT AAAGTGGAGA TGAACTCAGC GAGGTAAGCT CTTAGAGAAG 
CCAAGCTGAA TGAATCATCA AAGGAACCAA AGGCAACTCC AGCCATTGTT 
GTAGATGAAG AAGAAAGAAT AAGGAAATGT TTTGAAGGGT TTTTTTTTGT 
TTAGTGAAGA AGATGATAAG ACCTTTTGAA TGCTGTTCTC TTTATATAGG 
AGTATCGTTC ATGTATCCAT GCATATAACT TAAGTTTTAT AAAAAAATAC 
TATTTAATGA GTTTCTGTGG TGTGGTGGGT TACGTTGGAC CCAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT3G16240.1 [+] show detail - delta tonoplast integral protein
    E-value: 2e-143; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Major intrinsic protein 1.5e-17
HMMPanther TONOPLAST INTRINSIC PROTEIN 8.9e-14
HMMPanther Major intrinsic protein 8.9e-14
HMMPanther TONOPLAST INTRINSIC PROTEIN 5.9e-37
HMMPanther Major intrinsic protein 5.9e-37
FPrintScan Major intrinsic protein 4.3e-14
FPrintScan Major intrinsic protein 4.3e-14
Gene3D Major intrinsic protein 4.3e-16
PatternScan Major intrinsic protein, conserved site 0
HMMPfam Major intrinsic protein 6.3e-25
HMMPfam Major intrinsic protein 1.6e-06

See the detailed result >

AT3G16240.1

Model type
Protein coding
Short Description
delta tonoplast integral protein
Curator Summary
Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.
Computational Description
delta tonoplast integral protein (DELTA-TIP); FUNCTIONS IN: water channel activity, ammonia transmembrane transporter activity, urea transmembrane transporter activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: in 10 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10937 Blast hits to 10900 proteins in 2182 species: Archae - 87; Bacteria - 5160; Metazoa - 1503; Fungi - 423; Plants - 2497; Viruses - 0; Other Eukaryotes - 1267 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-44-A13 introduced

  • F23129 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found