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RAFL09-44-B01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08388)

full reading [+] show sequence

Nucleotide sequence: RAFL09-44-B01 - full reading 
ATCTTCCGCC ACAAGCTATG AGGAGAGTCA CCGGACTTGC CGCGCGCACA 
ATCTCATCCT CCGTCGCCAT CAATTCACGT CTCACTCAAT CCATGGCGAT 
TACAACCATT TCATCCTCCG AACCTATCTC CCGAAGATTC GGTGGTCTTC 
CAGAGATTAA AACTCCGTCT TTCGCCGGCG GAGTCGCTGG GGTTGTGTTC 
TTCTCTGCCG CTGCTGTATC GTCTCTTGGT CAAGAAGTTC ACGCTAAGGA 
AATGGCTCAG AAGTTTAATC CTAAAGAAGT TGTTCTGTAT CAGTACGAAG 
CTTGCCCTTT CTGTAACAAG GTTAAAGCGT TTTTGGATTA CAACAAGATT 
CCATACAAGG TTGTTGAAGT GAATCCTATC AGTAAGAAAG AAATCAAATG 
GTCTGATTAT AAGAAGGTGC CTATTCTTAC TGTAGATGGT GAACAAATGG 
TTGATTCTTC AGTGATAATC GATAGCTTAT TCCAAAAGAT GCACCCTGAA 
ATTTCCAAGT CCGAAGATGA TGAAGAGACT AAATGGCGCA AGTGGGTGGA 
CAACCACCTT GTGCATCTTT TGTCACCAAA CATATACAGG AATACTTCAG 
AGGCTCTTGA GTCCTTTGAA TATATCACCA CACATGGGAA TTTCAGTTTC 
ACTGAAAGAT TAGTGGCAAA GTATGCAGGA GCAACGGCAA TGTACTTTGT 
ATCAAAGAAA TTGAAGAAGA AATATAACAT TACAGATGAA CGTGCGGCTC 
TTTACGATGC TGCAGAGACA TGGGTCGATG CCTTGAAAGA GCGTCCATAC 
CTTGGTGGGT CAAAACCAAA CTTGGGCGAT CTCGCTGTAT TCGGTGTTCT 
GAGGCCAATA AGGTACCTTC GATCGGGTAA GGATATGGTG GACAACACAC 
GCATAGGTGA ATGGTATTCT CGAATGGAGA ACACGGTCGG AGAACCTTCT 
AGGATCAAAG AATAAAGGAT CATTGGTCGT ATCTCTTAGT GGAAATATGA 
ATTGCATAAT GAATCGCTGA TTTCACGGGC GTAACAATAT TTTAAGCTTT 
AGGACTAGAG AAGGAAACAA AGAAACTAAA GGAAATAAAC GTCTCTTCTT 
TGTGAATGAA GGATTTTGAA TACTGTGAGT CTGTGACATG CTTGGTTTGG 
TCACTGTTGC TATTACTAAA AAGTCGTTTC TTTGGTTT

Gene models with high sequence identity

  1. AT5G42150.1 [+] show detail - Glutathione S-transferase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glutaredoxin 2.7e-11
HMMPanther MICROSOMAL PROSTAGLANDIN E SYNTHASE-2 4.8e-86
ProfileScan Glutaredoxin 14.171
PatternScan Glutaredoxin active site 0
Gene3D Thioredoxin fold 9.3e-10
superfamily Thioredoxin-like fold 1.6e-15
superfamily Glutathione S-transferase, C-terminal-like 7.5e-09

See the detailed result >

AT5G42150.1

Model type
Protein coding
Short Description
Glutathione S-transferase family protein
Computational Description
Glutathione S-transferase family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutaredoxin active site (InterPro:IPR011767), Thioredoxin-like fold (InterPro:IPR012336); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-44-B01 introduced

  • F08335 - Specific phenotypes were NOT observed.
  • F24220 - Specific phenotypes were NOT observed.
  • F29640 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found