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  3. RAFL09-46-I18

RAFL09-46-I18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06284)

full reading [+] show sequence

Nucleotide sequence: RAFL09-46-I18 - full reading 
GCACTCTATA TCAAACATTT CTTTTAAAAA TGAGAAAGTT GTTGGCATCG 
CCGTTTAGTT CATTACTCGC CGTCGTTTTC ATTTCCGTCA TCTCCGTCGT 
CAGATGCTGC TCTCCTAAAG ATCAGACGGC TCTCAATGCT TTCAAGTCGT 
CACTGAGCGA ACCAAACCTC GGTATCTTCA ACACTTGGTC TGAAAACACT 
GATTGTTGCA AGGAATGGTA CGGTATCAGC TGCGATCCTG ATTCGGGTCG 
GGTCACTGAT ATTTCTCTCC GGGGAGAATC TGAAGACGCC ATTTTCCAAA 
AGGCAGGCCG GTCCGGTTAT ATGTCCGGTT CGATTGATCC AGCAGTTTGT 
GACTTAACCG CACTCACTTC CCTCGTTCTC GCCGACTGGA AAGGAATCAC 
CGGAGAGATT CCTCCGTGCA TTACTTCCCT AGCTTCGCTC CGTATCCTCG 
ATCTCGCCGG CAACAAGATC ACCGGGGAGA TTCCCGCGGA AATCGGCAAA 
CTCTCGAAAC TCGCTGTTTT AAACCTCGCC GAGAATCAAA TGTCCGGCGA 
GATTCCGGCG TCACTGACGT CACTCATCGA GTTGAAGCAT CTTGAATTGA 
CGGAAAATGG AATCACCGGC GTGATCCCGG CCGATTTCGG ATCGTTGAAG 
ATGTTGAGCA GAGTTTTACT GGGCCGTAAC GAACTAACCG GGTCAATTCC 
AGAGTCGATC TCGGGTATGG AACGGTTAGC GGATCTGGAT CTATCCAAAA 
ACCATATCGA AGGTCCGATA CCCGAATGGA TGGGTAACAT GAAGGTACTC 
TCACTTTTGA ATCTCGATTG CAATTCGTTA ACCGGTCCAA TCCCCGGTTC 
GCTTCTTAGC AATTCCGGTT TAGATGTTGC CAATTTGAGC CGAAATGCGT 
TGGAAGGAAC TATACCCGAC GTTTTCGGGT CAAAAACGTA TTTAGTTTCG 
CTTGATCTGT CACACAATAG TCTATCGGGT CGGATCCCGG ATTCGTTGTC 
GTCAGCTAAG TTTGTGGGAC ATTTGGATAT TAGCCATAAC AAGCTTTGTG 
GGCGTATTCC AACGGGTTTT CCTTTTGATC ACCTTGAAGC TACGTCGTTT 
AGTGACAACC AATGTCTCTG CGGTGGCCCT TTGACGACGT CATGTTAATA 
ACAAGGATAT GGTTTCTGGT TTTACTGAAC CGGGTTATTC TTTTTGCTGT 
TGCTCTTGTT CGTTGTATCA AACTTGTGAT ATTTTGCTTT TCATTTCTTC 
GTCTTTCAGA TTTTAGTTTC TAAAGCTAAG ATATGTTACT GGCAACGGAC 
AGGTACACCG ATCCAATATG GTTTGCGGTC TATGTACAAT GAATCCGGAT 
GTAAAATCAA AAGCAATGTT ATAGAATTTA ATTTCAAGAT C

Gene models with high sequence identity

  1. AT3G12610.1 [+] show detail - Leucine-rich repeat (LRR) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther LRR RECEPTOR-LIKE KINASE 1.4e-80
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.4e-80
Gene3D no description 3.4e-65
Gene3D no description 3.4e-13
superfamily L domain-like 2.4e-78
HMMPfam Leucine-rich repeat 0.023
HMMPfam Leucine-rich repeat 0.97
HMMPfam Leucine-rich repeat 0.031
HMMPfam Leucine-rich repeat 0.88
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 2e-09

See the detailed result >

AT3G12610.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Curator Summary
Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes.
Computational Description
DNA-DAMAGE REPAIR/TOLERATION 100 (DRT100); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT3G20820.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-46-I18 introduced

  • F14320 - seed::increased size
  • F19701 - Specific phenotypes were NOT observed.
  • F21446 - Specific phenotypes were NOT observed.
  • F27250 - Specific phenotypes were NOT observed.
  • F28345 - seed::increased size

Mutant lines with disrupted or induced

11 mutant lines found