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RAFL09-46-K01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06288)

full reading [+] show sequence

Nucleotide sequence: RAFL09-46-K01 - full reading 
AGTTCAACTA ATAACGCAAA AATCAGTTTC TCTTTGAGTA AGTGTTTATT 
ACAATTAAAC TAACTCAGGC AAGTCTATGA TCATGGCTTC TTCTGCTGCT 
GCATCGATCT CTATGATAAC TCTAAGGAAC CTCTCTCGCA ATCATCAATC 
TCACCAAAGC ACTTTTCTCG GTTTCTCTAG ATCCTTCCAT AACCAAAGGA 
TCTCATCTAA CAGTCCAGGT CTCTCCACAC GAGCAAGATC CACCACTTCC 
TCCACTGGAG GTTTCTTCAG AACCATTTGC AGCAGCAGTA GCAATGACTA 
CTCCAGACCA ACTAAGATCC AAGAGCTTAA CGTCTACGAG TTCAACGAAG 
GTGATCGAAA CAGTCCAGCG GTTTTAAAAC TAGGGAAAAA ACCAGATCAG 
CTTTGTCTCG GAGATCTTGT CCCCTTCACA AACAAACTCT ACACAGGAGA 
TCTCACAAAA CGCATAGGAA TCACCGCAGG TCTCTGCGTT TTGATCCAAC 
ATGTTCCAGA GAAGAAAGGT GATCGCTTTG AAGCTTCTTA CAGTTTCTAC 
TTCGGAGATT ATGGTCACAT ATCAGTTCAA GGACCTTATC TCACTTACGA 
GGACACGTTT CTTGCTATCA CCGGTGGCTC CGGTGTGTTT GAAGGAGCTT 
ATGGACAGGT CAAGCTTCGT CAGCTTGTGT ATCCTACGAA GCTGTTTTAC 
ACTTTCTACT TGAAAGGTGT TGCTGCTGAT TTACCTGTGG AGCTTACCGG 
AAAACATGTT GAGCCGTCGA AGGAAGTGAA ACCGGCGGCT GAAGCTCAGG 
CGACTCAGCC CGGCGCTACG ATCGCTAACT TTACTAATTG AAATCTAAAT 
CTTTGTGGGT GTCTTTGTCA TGGATCTTAT TGGGCTGTTG TTCATTGTGT 
TTACATTTTA ATAATGGGCC TAAATAATGA GCCTTTGTAT TGGGCCGTTC 
TCGTAAGCGT AATGTGTCCC GTCCCTATAA GCTGGATTTA AGCGCGTGAA 
CTCCACCTTC CGATATTTTT TTTTGATAGA TTATATCAAA TCCATGGATA 
CTTTCTATAT TTGGAAAGTT TGGCTTAGTA GGCTCGTGGC CATGTTTGAG 
CT

Gene models with high sequence identity

  1. AT1G13280.1 [+] show detail - allene oxide cyclase 4
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMPfam Allene oxide cyclase 4.5e-93
BlastProDom Allene oxide cyclase 6e-104

See the detailed result >

AT1G13280.1

Model type
Protein coding
Short Description
allene oxide cyclase 4
Curator Summary
Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway.
Computational Description
allene oxide cyclase 4 (AOC4); FUNCTIONS IN: allene-oxide cyclase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Allene oxide cyclase (InterPro:IPR009410); BEST Arabidopsis thaliana protein match is: allene oxide cyclase 3 (TAIR:AT3G25780.1); Has 204 Blast hits to 204 proteins in 33 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-46-K01 introduced

  • F01613 - Specific phenotypes were NOT observed.
  • F04215 - Specific phenotypes were NOT observed.
  • F06049 - seed::increased size / seed::increased length
  • F09624 - Specific phenotypes were NOT observed.
  • F20420 - Specific phenotypes were NOT observed.
  • F20629 - Specific phenotypes were NOT observed.
  • F27626 - seed::increased size / seed::increased length
  • F29016 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found