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RAFL09-46-P19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda08408)

full reading [+] show sequence

Nucleotide sequence: RAFL09-46-P19 - full reading
ATATACCAAA AACGAAACTG AGAAAGAAGT TTTATTTATT AATTAATGGC 
GGAAGAGAAA AGCTACAAGT ACGTGATCAT TGGAGGTGGT GTAGCCGGCG
GTTACGCGGC GAGAGAGTTT AGTAATCAGG GCCTGAAGCC TGGTGAACTC
GCAATCATTT CCAAGGAACC AGTGCCTCCT TTTGAGCGTC CTGAACTAAC
CAAGGTATAT ATTGACCTCG AAGTCAATCC GACCCTTGCA AATATCTATG
TTTGTGCTGG AACTGGAGAA GCGAAGCAGT ACCCTAACTG GTACAAAGAG
AAAGGGATTG ATCTAATTGT GGGCACAGAG ATAGTCAAAG CAGATCTTGC
TTCAAAGACA CTTGTTAGTG ATGATGGCAA AATTTACAAG TACCAAACTT
TGCTAATTGC AACCGGTTCT ACTAACATAA GATTGTCAGA AATTGGCGTC
CAAGAAGCAG ATGTTAAGAA TATATTCTAC CTAAGAGAAA TCGAGGATAG
TGATGAGCTT GCCTTGGCTA TGGAACTATA TGTGCAAAGG GGAAAGGCCG
TCATCATTGG CGGCGGTTTC TTAGGGCTTG AGATAAGTTC TGCTCTAAGG
GCTAATAATC ATGAAGTGAC CATGGTTTTT CCAGAACCTT GGCTTGTACA
CCGGTTTTTC ACCGCTGAGA TAGCTTCATT CTATGAGAGT TACTATGCCA
ACAAGGGAAT CAAAATCATC AAGGGAACTG TAGCAACTGG ATTTAGCACC
AACTCAGATG GAGAGGTCAC TGAGGTGAAA CTAGAGGATG GAAGAACCCT
AGAAGCTAAC ATAGTTGTCG CTGGTGTCGG TGCTAGACCG GCCACCTCAC
TCTTCAAAGG CCAACTTGAA GAGGAGAAGG GTGGAATAAA GACTGATGGG
TTCTTCAAAA CAAGTGTGCC TGATGTATAC GCACTTGGAG ATGTAGCCAC
ATTCCCAATG AAAATGTATG GCGGGACGAG GCGTGTTGAA CACGCCGACA
ATGCTCGCAA ATCTGCTGCA CAAGCAGTCA AAGCAATCAA AGCGGGTGAA
GAAGGGAAAA CGATCCCAGA TTACGATTAT CTTCCCTATT TCTACTCTCG
ATTTTTCAAA CTATCGTGGG AATTCTATGG GGAAAACGTT GGAGAATCTG
TACTGTTTGG AGATAATGAC CCGAAATCTC CAAAGCCAAA GTTTGGGACG
TATTGGGTTA AAGATGGGAA AGTAGTAGGA GTGTTCCTAG AAGGAGGTAC
TCAAGAGGAA CACAAGGCTA TTGCTAAAGT GGCACGAGCA CAACCTTCCG
TTGAGAGTCT TGACGTGTTA TCCGAGGAAG GCCTTTCTTT CGCCACCAAG
TTCTATAGCA CCTCTCTTTG AGACATTGGG TCTTGTTTAG TCACATTGAT
GTAATAATCT CCTTTGTCTT TGATTTCATA TCGAGCCCCT ATTGTATTTC
GAAAAATAAA TTAAATATAA TAATGCG

Gene models with high sequence identity

  1. AT3G09940.1 [+] show detail - monodehydroascorbate reductase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily FAD/NAD(P)-binding domain 7.8e-39
superfamily FAD/NAD(P)-binding domain 2.1e-17
superfamily FAD/NAD-linked reductase, dimerisation 4.1e-16
Gene3D no description 6.4e-18
Gene3D no description 9.1e-37
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4.2e-18
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4.2e-18
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4.2e-18
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 4.2e-18
FPrintScan PNDRDTASEI 7.3e-16
FPrintScan PNDRDTASEI 7.3e-16
FPrintScan PNDRDTASEI 7.3e-16
FPrintScan PNDRDTASEI 7.3e-16
HMMPanther MONODEHYDROASCORBATE REDUCTASE (NADH) 1.8e-182
HMMPanther DISULFIDE OXIDOREDUCTASE 1.8e-182
HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 6.5e-34
HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 2.4e-16

See the detailed result >

AT3G09940.1

Model type
Protein coding
Short Description
monodehydroascorbate reductase
Curator Summary
Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.
Computational Description
monodehydroascorbate reductase (MDHAR); FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to jasmonic acid stimulus, regulation of symbiosis, encompassing mutualism through parasitism, response to water deprivation, response to salt stress, response to symbiotic fungus; LOCATED IN: cytosol; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: Pyridine nucleotide-disulphide oxidoreductase family protein (TAIR:AT5G03630.1); Has 31567 Blast hits to 31505 proteins in 3041 species: Archae - 687; Bacteria - 24961; Metazoa - 895; Fungi - 665; Plants - 718; Viruses - 0; Other Eukaryotes - 3641 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-46-P19 introduced

  • F02217 - seed::decreased size
  • F02306 - Specific phenotypes were NOT observed.
  • F04438 - Specific phenotypes were NOT observed.
  • F07511 - Specific phenotypes were NOT observed.
  • F07632 - seed::decreased length
  • F09105 - Specific phenotypes were NOT observed.
  • F11111 - Specific phenotypes were NOT observed.
  • F12338 - seed::increased size / seed::increased length
  • F19011 - rosette leaf::abnormal / sporophyte vegetative stage::decreased speed / fruit::decreased length
  • F25246 - Specific phenotypes were NOT observed.
  • F25517 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found