1. Home
  2. Full-length cDNAs
  3. RAFL09-47-B20

RAFL09-47-B20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda06311)

full reading [+] show sequence

Nucleotide sequence: RAFL09-47-B20 - full reading 
AAAAAAAAAA AAAAGAAAGT AAAAAACGCG TCAGGGAAGA GAAGATGGAT 
CCGAATTCCA CGGTTTCCGG CGATGGTCAG GCGACGGCGG CGATAGAGCA 
TCGGTCCTTC GCTCGGATCG GATTTCTCGG AAACCCGAGC GATGTATACT 
TCGGGCGAAC CATATCATTG ACCATCGGAA ACTTCTGGGC ATCCGTGAAG 
CTGGAGCCAT CGGAGCATCT CGTAATCAAG CCTCATCCAT TCCATGATCT 
CGTCCAGTTC ACCTCTCTCG ACCATCTCCT GAATCGTTTG CAAAATGAAG 
GATACTACGG TGGGGTAAGG TTGCTAATGG CGATATGTAA AGTATTCCGT 
AACTATTGCA AAGAGAATGA CATTCAACTT CACCAAGCCA ACTTCTCTCT 
TTCTTATGAT ACCAATATCC CTAGGCAGAC AGGGCTTTCG GGTTCTAGTG 
CCATCGTATC CGCTGCCCTT AACTGCCTTC TCGACTTCTA CAATGTCAGG 
CATTTGATCA AAGTACAAGT CCGCCCTAAC ATTGTTCTCA GTGCTGAGAA 
AGAACTTGGC ATTGTTGCTG GTCTTCAGGA CAGGGTTGCT CAGGTCTATG 
GTGGTCTTGT TCACATGGAT TTTAGCAAGG AGCACATGGA TAAATTGGGG 
CATGGGATTT ACACTCCTAT GGATATCAGT CTCCTCCCTC CTCTGCATCT 
CATCTATGCT GAGAATCCGA GCGACTCAGG GAAGGTACAT AGTATGGTTC 
GGCAAAGATG GTTAGACGGT GATGAGTTTA TAATCTCATC AATGAAAGAA 
GTCGGAAGTC TAGCAGAAGA AGGTCGAACT GCATTACTCA ACAAGGACCA 
TTCCAAACTT GTGGAACTCA TGAACCTTAA TTTCGACATT CGGAGGCGGA 
TGTTTGGGGA TGAATGCTTA GGAGCAATGA ACATAGAGAT GGTGGAAGTA 
GCAAGGAGGG TTGGTGCAGC CTCAAAGTTC ACTGGAAGTG GAGGAGCAGT 
GGTGGTTTTC TGCCCTGAAG GTCCATCTCA GGTGAAACTT CTGGAAGAAG 
AATGCAGGAA AGCGGGATTT ACGCTTCAGC CGGTAAAAAT TGCGCCTTCA 
TGTTTGAATG ATTCTGACAT TCAGACCTTA TGAAAGCCTT GATCAAGTCT 
TCTTATTCAC ACGATAGAGC CATTTTCCAG AGAAATAAAC ATGTGAGCTT 
TAATTGGGTG GTTGTTCTGT TTCTTTTTCT TGCCCATTTT TGTTGTTTGT 
TCCTTGGCTT ATACTAATAT GTTTGTTTTG TTTCTTTTTC CACATTAAGG 
TCCAATTTTT TATATTATAT TAAAAGAACT AAAGAACAGA TGATCAAAAT 
TGAAGTAGTA ATGATATTTA TTTGCC

Gene models with high sequence identity

  1. AT3G01640.1 [+] show detail - glucuronokinase G
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Ribosomal protein S5 domain 2-type fold 9.5e-26
superfamily GHMP Kinase, C-terminal domain 1.2e-18
Gene3D Ribosomal protein S5 domain 2-type fold, subgroup 7e-07
HMMPfam GHMP kinase 1.1e-08
HMMPfam GHMP kinase, C-terminal 1.9e-05
FPrintScan Mevalonate/galactokinase 9.4e-09
FPrintScan Mevalonate/galactokinase 9.4e-09
FPrintScan Mevalonate/galactokinase 9.4e-09
FPrintScan Mevalonate/galactokinase 9.4e-09

See the detailed result >

AT3G01640.1

Model type
Protein coding
Short Description
glucuronokinase G
Curator Summary
AtGlcAK is a sugar kinase able to phosphorylate D-GlcA to D-GlcA-1-phosphate in the presence of ATP.
Computational Description
glucuronokinase G (GLCAK); FUNCTIONS IN: poly(U) RNA binding, glucuronokinase activity, ATP binding; INVOLVED IN: cell wall biogenesis, inositol metabolic process, pollen tube development; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mevalonate/galactokinase (InterPro:IPR006206), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), GHMP kinase (InterPro:IPR006204), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), GHMP kinase, C-terminal (InterPro:IPR013750); BEST Arabidopsis thaliana protein match is: GHMP kinase family protein (TAIR:AT5G14470.1); Has 420 Blast hits to 420 proteins in 152 species: Archae - 38; Bacteria - 195; Metazoa - 13; Fungi - 2; Plants - 68; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-47-B20 introduced

  • F11703 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found